Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RP6297_RS04830 Genome accession   NZ_CP066771
Coordinates   1011009..1013528 (+) Length   839 a.a.
NCBI ID   WP_009238492.1    Uniprot ID   U3GFJ0
Organism   Ralstonia pickettii strain K-288     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006009..1018528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP6297_RS04810 (RP6297_00962) - 1006980..1008059 (-) 1080 WP_009277362.1 hypothetical protein -
  RP6297_RS04815 (RP6297_00963) - 1008131..1009381 (+) 1251 WP_009277363.1 lipoprotein-releasing ABC transporter permease subunit -
  RP6297_RS04820 (RP6297_00964) lolD 1009374..1010102 (+) 729 WP_009238494.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RP6297_RS04825 (RP6297_00965) - 1010187..1010999 (+) 813 WP_009238493.1 TatD family hydrolase -
  RP6297_RS04830 (RP6297_00966) comA 1011009..1013528 (+) 2520 WP_009238492.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RP6297_RS04835 (RP6297_00967) - 1013634..1015118 (+) 1485 WP_009238491.1 circularly permuted type 2 ATP-grasp protein -
  RP6297_RS04840 (RP6297_00968) - 1015193..1016143 (+) 951 WP_009238490.1 alpha-E domain-containing protein -
  RP6297_RS04845 (RP6297_00969) - 1016202..1017047 (+) 846 WP_009238489.1 transglutaminase family protein -
  RP6297_RS04850 (RP6297_00970) - 1017130..1018032 (+) 903 WP_009238488.1 hypothetical protein -

Sequence

Protein


Download         Length: 839 a.a.        Molecular weight: 90234.66 Da        Isoelectric Point: 9.4942

>NTDB_id=522451 RP6297_RS04830 WP_009238492.1 1011009..1013528(+) (comA) [Ralstonia pickettii strain K-288]
MRLRLIGFVAGCVALQMQATLLPVWLPLGVLVLCLLLAAVSRRRLTLFHVLLVAAAVAAGFGWSDWRAQQRMAVALSPAW
EGKDIVATGVVAELPQLGDDATRFLFHIESSNAGGAVPPRVRLSWYGTRTWGNVGEEDAKPDRRAGIPDLQPGQRWQLTL
RLKRPHSLTNPGGFDGEYAMLADNIRAVGYVRTGKRAQNIALDEAGTGFGIGVERWRASVRHRILDALPDGRYAAVIVAL
VMGDQSGIAPDDWDLFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFWLARWVRTPLPLRMPAPRTGAIAAMLAAF
AYCLLAGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCWAAAAVAVMDPWAVMSAGFWLSFGAVAIIFIAAQMALDGHR
SENAGWVGATRRALAGGTRIQFAVTFGLLPLTLLLFQQTSVVSVAANGLAIPAVSFVTTPLALIGAALPDPLAQPVLALA
EASFRWLVVWLEWLAKPRWSVWVAPVGPMWAVLLSMVAVALLLVPGGLRAWAWRAQGALLLLPLVLAREPLPSPGEFRLV
AFDIGQGAAALVETANHRLLFDTGPRYGDHADAAARVIAPYLRAHGVEALDTLAVSHEDNDHAGGTETVIGAVPVRTMLA
SLPPGHALRGTADANNIGFADCLAGQAWTWDGVVFEVLHPRRLPAESERVSSNARSCVLRIANGRHAALLTGDIEAAQER
ALIAAETPERLMADILLVPHHGSKTSSSGAFLDAVSPQVAVFQVGYRNRYGHPHPQVWQRYVARDIDGLRTDKTGAVVIQ
TDGDVLDIQTARAMRPRYWSSAREVDPLATAAGAFDAPP

Nucleotide


Download         Length: 2520 bp        

>NTDB_id=522451 RP6297_RS04830 WP_009238492.1 1011009..1013528(+) (comA) [Ralstonia pickettii strain K-288]
ATGCGTCTGCGGTTGATCGGCTTTGTTGCCGGCTGCGTGGCATTGCAGATGCAGGCGACGCTGCTGCCGGTGTGGCTGCC
GCTTGGCGTGCTGGTGCTCTGTCTATTGCTGGCGGCGGTCTCGCGGCGTCGGCTAACGCTGTTTCACGTGTTGCTGGTCG
CCGCCGCCGTTGCGGCAGGCTTTGGCTGGAGCGATTGGCGCGCGCAGCAGCGCATGGCCGTGGCGCTCAGCCCTGCGTGG
GAAGGCAAGGACATCGTCGCGACCGGCGTGGTGGCCGAGTTGCCGCAGCTCGGCGATGACGCCACCCGCTTTCTCTTCCA
CATCGAATCCAGCAATGCAGGTGGTGCCGTGCCACCCCGCGTGCGCCTGTCCTGGTATGGCACACGCACGTGGGGCAACG
TGGGCGAGGAAGATGCAAAGCCGGACCGACGCGCCGGCATCCCCGATCTGCAGCCCGGCCAACGCTGGCAATTGACGCTG
CGCCTAAAGCGCCCGCACAGCCTGACCAACCCCGGCGGCTTTGACGGCGAATACGCGATGCTGGCCGACAACATCCGGGC
CGTCGGCTATGTGCGTACAGGCAAGCGCGCGCAGAACATTGCACTGGATGAGGCGGGCACCGGTTTCGGAATCGGCGTGG
AGCGCTGGCGCGCCAGCGTGCGGCACCGCATCCTCGATGCCTTGCCCGATGGGCGCTACGCGGCTGTCATTGTCGCCCTG
GTGATGGGCGACCAGAGCGGCATCGCCCCCGACGACTGGGACCTGTTCCGCCGCACCGGCATCAGCCACCTCGTCAGCAT
TTCGGGGCTGCACATCACGATGATCGCCGGGCTGTTTGCAGCGTTGTGGATGGCGCTGTGGCGTCGCTCGTTCTGGCTGG
CGCGCTGGGTGCGTACGCCATTGCCGCTGCGCATGCCGGCCCCGCGCACAGGCGCCATCGCCGCCATGCTGGCGGCGTTC
GCCTACTGCCTGCTCGCCGGGATGGGTGTGCCGGCGCAGCGCACGCTGCTGATGCTCTCCACCGTAGCCATCGCCCGGCT
GACCGATCGGAATGTGCCGGCCAGCCTCTCGCTGTGCTGGGCGGCGGCCGCGGTGGCGGTGATGGACCCGTGGGCGGTCA
TGTCGGCGGGGTTCTGGCTGTCGTTCGGCGCGGTGGCGATCATCTTCATCGCGGCGCAGATGGCGCTCGATGGCCATCGC
AGTGAAAACGCAGGCTGGGTTGGAGCCACGCGCCGTGCGCTCGCCGGCGGTACGCGGATTCAGTTCGCCGTCACATTCGG
GCTGTTGCCTTTGACCTTGCTGTTGTTCCAGCAGACGTCGGTCGTCTCTGTTGCGGCAAATGGGCTGGCAATTCCCGCGG
TGAGTTTCGTGACGACACCGCTGGCGCTGATCGGCGCGGCCCTCCCGGACCCGCTGGCGCAGCCAGTGCTGGCGTTGGCC
GAAGCGAGCTTCCGGTGGCTGGTCGTCTGGCTTGAATGGCTGGCGAAGCCGCGCTGGTCTGTGTGGGTTGCGCCGGTCGG
GCCCATGTGGGCAGTGTTGCTGTCGATGGTTGCAGTGGCGCTATTGCTGGTGCCGGGTGGCTTGCGCGCATGGGCGTGGC
GCGCACAGGGCGCCTTGCTCCTCTTGCCGTTGGTACTGGCGCGCGAGCCATTGCCATCGCCTGGCGAATTCCGGCTCGTC
GCGTTCGACATCGGCCAGGGCGCTGCGGCCTTGGTTGAAACGGCCAACCATCGCCTGCTGTTCGACACCGGTCCGCGCTA
CGGCGACCATGCGGATGCCGCCGCCCGCGTCATCGCTCCCTATCTGCGAGCACATGGCGTGGAAGCGCTCGACACGCTTG
CCGTCAGCCACGAAGACAACGACCACGCCGGTGGCACCGAAACGGTGATCGGCGCGGTGCCGGTGCGCACCATGTTGGCG
TCTTTGCCTCCGGGGCATGCCCTGCGCGGCACGGCCGATGCCAACAACATCGGTTTTGCCGATTGTTTGGCTGGGCAAGC
ATGGACGTGGGACGGCGTTGTCTTTGAGGTGCTGCACCCGCGGCGTTTGCCGGCTGAAAGCGAGCGCGTGTCCAGCAACG
CCCGCAGTTGTGTGCTGCGTATCGCCAATGGCCGCCACGCCGCCTTGCTGACCGGCGATATCGAAGCTGCCCAGGAACGG
GCCCTCATCGCCGCAGAAACGCCTGAGCGACTGATGGCAGACATCTTGCTTGTGCCTCATCACGGCAGCAAGACAAGCTC
CAGCGGCGCGTTCTTGGACGCGGTTTCTCCGCAAGTGGCGGTTTTCCAGGTCGGCTACCGCAATCGGTACGGACATCCGC
ATCCGCAGGTTTGGCAGCGCTACGTAGCGCGCGACATCGACGGGTTGCGCACGGACAAGACCGGTGCCGTCGTCATTCAG
ACCGACGGCGATGTGCTGGACATCCAGACCGCGCGCGCCATGCGGCCGCGCTACTGGTCTTCCGCACGCGAAGTGGACCC
CCTGGCAACGGCCGCCGGCGCCTTCGATGCCCCGCCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(240-524)

Domain of unknown function (DUF4131) (DUF4131)

(22-194)

Metallo-beta-lactamase superfamily (Lactamase_B)

(565-761)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U3GFJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

72.491

100

0.732