Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JFN94_RS10265 Genome accession   NZ_CP066769
Coordinates   2189746..2191122 (-) Length   458 a.a.
NCBI ID   WP_124830632.1    Uniprot ID   A0A7T7AGB1
Organism   Burkholderia anthina strain BJQ0011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2184746..2196122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFN94_RS10245 (JFN94_10245) cls 2185065..2186504 (+) 1440 WP_199568456.1 cardiolipin synthase -
  JFN94_RS10250 (JFN94_10250) - 2186626..2187105 (-) 480 WP_199568457.1 glutathione peroxidase -
  JFN94_RS10255 (JFN94_10255) - 2187242..2189173 (+) 1932 WP_124830630.1 ATP-binding cassette domain-containing protein -
  JFN94_RS10260 (JFN94_10260) - 2189330..2189596 (-) 267 WP_124830631.1 DUF2866 domain-containing protein -
  JFN94_RS10265 (JFN94_10265) radA 2189746..2191122 (-) 1377 WP_124830632.1 DNA repair protein RadA Machinery gene
  JFN94_RS10270 (JFN94_10270) alr 2191134..2192204 (-) 1071 WP_124830633.1 alanine racemase -
  JFN94_RS10275 (JFN94_10275) lplT 2192423..2193730 (+) 1308 WP_124830634.1 lysophospholipid transporter LplT -
  JFN94_RS10280 (JFN94_10280) thiD 2193789..2194598 (+) 810 WP_124830635.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JFN94_RS10285 (JFN94_10285) - 2194623..2195576 (-) 954 WP_124830636.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48833.29 Da        Isoelectric Point: 6.7606

>NTDB_id=522439 JFN94_RS10265 WP_124830632.1 2189746..2191122(-) (radA) [Burkholderia anthina strain BJQ0011]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPVAELQLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIEGLNVMAVERLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=522439 JFN94_RS10265 WP_124830632.1 2189746..2191122(-) (radA) [Burkholderia anthina strain BJQ0011]
GTGGCCAAACAGAAAACCGTCTACGTCTGCAGCGAGTGCGGCGGACAAACGCCGAAGTGGCAGGGGCAATGCCCGTCGTG
CCAGGCCTGGAACACCCTCGTCGAATCGGTTGCCGAATCGCCGGCGGCCCATCGCTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTGCAGCGTCTGGTCGACATCGAGGCGGCCGACGTGCCGCGCTTCTCGACGGGGATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTGCCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACACTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGAGCACTCTATATCAGTGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCAC
AACGGCTCGCGCTGCTCGACGGCGGCGCGCCGGTGGCCGAGTTGCAGCTGCTCGCGGAGATCCAGCTCGAGAAGATCCAG
GCGGCGATCGACGCCGAGCGGCCGGACGTGGCCGTCATCGACTCGATCCAGACCGTTTATTCGGAGGCGCTGACGTCGGC
GCCCGGTTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCCGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTTGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACCCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGTGCGGTCAACGAACTCGGCGTGTT
TGCGATGACCGAGCGCGGGCTGCGCGGTGTCGCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCGG
GTTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACGGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGTCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGACACGCCGG
CATCGCGTGCTTCGACCAGGACGTGTTTCTGAACGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTGGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAGGTGGGGCTGGCG
GGTGAGATCCGGCCGTCCCCGCGCGGGCAGGAGCGGCTGCGGGAAGCCGCGAAGCTTGGATTCACGGCTGCGCTGATCCC
TAAGGCGAACGCACCGAAGCAGCCGATCGAAGGACTGAACGTGATGGCCGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TACGCGATCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7AGB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

46.638

100

0.469
  radA Streptococcus pneumoniae D39

46.638

100

0.469
  radA Streptococcus pneumoniae R6

46.638

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.469
  radA Streptococcus mitis SK321

46.943

100

0.469
  radA Streptococcus mitis NCTC 12261

46.608

99.782

0.465