Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   K4756_RS03735 Genome accession   NZ_CP081458
Coordinates   727482..728612 (+) Length   376 a.a.
NCBI ID   WP_015482914.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ps4060     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 722482..733612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4756_RS03715 (K4756_03705) yeeF 722573..724582 (-) 2010 WP_015482911.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  K4756_RS03720 (K4756_03710) - 724749..725087 (+) 339 WP_015482912.1 hypothetical protein -
  K4756_RS03725 (K4756_03715) - 725100..726020 (+) 921 WP_015383026.1 DUF5655 domain-containing protein -
  K4756_RS03730 (K4756_03720) - 726176..727336 (+) 1161 WP_015482913.1 lysozyme inhibitor LprI family protein -
  K4756_RS03735 (K4756_03725) rapC 727482..728612 (+) 1131 WP_015482914.1 response regulator aspartate phosphatase RapH Regulator
  K4756_RS03740 (K4756_03730) phrH 728602..728775 (+) 174 WP_015482915.1 phosphatase RapH inhibitor PhrH -
  K4756_RS03745 (K4756_03735) yeeI 728935..729654 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K4756_RS03750 (K4756_03740) yeeK 729788..730255 (+) 468 WP_015482916.1 spore coat protein YeeK -
  K4756_RS03755 (K4756_03745) yezE 730369..730953 (+) 585 WP_015482917.1 TetR/AcrR family transcriptional regulator -
  K4756_RS03760 (K4756_03750) yesE 731032..731478 (+) 447 WP_015383031.1 nuclear transport factor 2 family protein -
  K4756_RS03765 (K4756_03755) yesF 731475..732340 (+) 866 Protein_691 SDR family oxidoreductase -
  K4756_RS03770 (K4756_03760) cotJA 732467..732715 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  K4756_RS03775 (K4756_03765) cotJB 732699..732962 (+) 264 WP_003219491.1 spore coat protein CotJB -
  K4756_RS03780 (K4756_03770) cotJC 732977..733546 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43884.14 Da        Isoelectric Point: 5.8846

>NTDB_id=522438 K4756_RS03735 WP_015482914.1 727482..728612(+) (rapC) [Bacillus subtilis subsp. subtilis strain ps4060]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIENPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HVLQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=522438 K4756_RS03735 WP_015482914.1 727482..728612(+) (rapC) [Bacillus subtilis subsp. subtilis strain ps4060]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGAACCCGCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATGTTCTTCAAGCCTTGGACATTTATCAAAACAATCCCCTATACAGCATTAGAACCATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTTTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTGTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.16

100

0.402
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396