Detailed information NTG0522430

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JG536_RS14260
• Genome accession: NZ_CP066762
• Coordinates: 3087723..3088883 (+)
• Length: 386 a.a.
• NCBI ID: WP_175656266.1
• Uniprot ID: -
• Organism: Burkholderia ambifaria strain BJQ0010
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3082723..3093883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JG536_RS14230 (JG536_14230)	-	3083348..3083956 (+)	609	WP_006753282.1	50S ribosomal protein L25/general stress protein Ctc	-
JG536_RS14235 (JG536_14235)	pth	3084086..3084685 (+)	600	WP_006760396.1	aminoacyl-tRNA hydrolase	-
JG536_RS14240 (JG536_14240)	hisC	3084811..3085878 (+)	1068	WP_175670615.1	histidinol-phosphate transaminase	-
JG536_RS14245 (JG536_14245)	-	3085972..3086238 (-)	267	WP_175670616.1	YfhL family 4Fe-4S dicluster ferredoxin	-
JG536_RS14250 (JG536_14250)	coaD	3086298..3086795 (-)	498	WP_006398238.1	pantetheine-phosphate adenylyltransferase	-
JG536_RS14255 (JG536_14255)	rsmD	3086907..3087521 (-)	615	WP_105832994.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
JG536_RS14260 (JG536_14260)	pilA	3087723..3088883 (+)	1161	WP_175656266.1	signal recognition particle-docking protein FtsY	Machinery gene
JG536_RS14265 (JG536_14265)	maiA	3088991..3089635 (-)	645	WP_175670617.1	maleylacetoacetate isomerase	-
JG536_RS14270 (JG536_14270)	ybiB	3089826..3090800 (+)	975	WP_175656265.1	DNA-binding protein YbiB	-
JG536_RS14275 (JG536_14275)	leuA	3091204..3092850 (+)	1647	WP_175670618.1	2-isopropylmalate synthase	-
JG536_RS14280 (JG536_14280)	-	3092994..3093377 (-)	384	WP_011657982.1	nuclear transport factor 2 family protein	-

Sequence

Protein

• Length: 386 a.a.
• Molecular weight: 41139.98 Da
• Isoelectric Point: 4.8019

>NTDB_id=522430 JG536_RS14260 WP_175656266.1 3087723..3088883(+) (pilA) [Burkholderia ambifaria strain BJQ0010]
MFSFFKRFKKTQESDSTESQSADALQPDEPSDAPAADARPAIEAPPAPAQPQPAAPAVVMTVTPTNDGSDDVVEAVEIVP
PPTQDASAKKSWLTRLKTGLAKTGSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYLLGALREKVKTGRLTDPQQV
KSALHDLLVELLKPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERN
NVTVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNAL
TQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAVEFADALFD

Nucleotide

• Length: 1161 bp

>NTDB_id=522430 JG536_RS14260 WP_175656266.1 3087723..3088883(+) (pilA) [Burkholderia ambifaria strain BJQ0010]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGTCCGACTCCACGGAATCGCAATCGGCCGACGCGCTGCAACC
GGACGAGCCGTCCGACGCGCCCGCCGCCGATGCCCGTCCGGCGATCGAAGCCCCGCCAGCCCCCGCGCAACCGCAACCGG
CCGCGCCGGCCGTCGTGATGACGGTCACGCCGACCAACGACGGCAGCGACGACGTCGTCGAAGCGGTCGAGATCGTGCCG
CCGCCGACGCAGGACGCCTCCGCGAAGAAATCGTGGCTCACCCGCCTGAAAACGGGGCTCGCGAAGACGGGTTCGAGCAT
TACCGGCGTGTTCGTCAACACGAAGATCGACGAGGATCTGTACGAAGAACTCGAAGCCGCGCTGCTGATGTCCGACGCCG
GCGTCGATGCGACCGAGTACCTGCTCGGTGCGCTGCGCGAGAAAGTGAAAACGGGCCGGCTGACCGATCCGCAGCAGGTG
AAGAGCGCGCTGCACGACCTGCTCGTCGAACTGCTGAAGCCGCTAGAGAAATCGCTGATGCTCGGCCGCGCGCAGCCGCT
CGTGATGATGATCACCGGCGTGAACGGCGCGGGCAAGACCACCAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCG
ACCAGTCGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCGGTCTGGGGCGAGCGCAAC
AACGTGACGGTCGTCCAGCAGGAAAGCGGCGACCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAA
GATCGACGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGTTGCACCTGATGGAAGAGCTGAAGAAGGTGAAGC
GCGTGATCTCGAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTC
ACGCAGGTGAAGGCCTTCGACGATGCGCTCGGCCTCACGGGCCTGATCGTCACGAAGCTCGACGGCACGGCCAAGGGCGG
GATCCTCGCCGCGATCGCGCGGCAGCGCCCGGTGCCCGTCTACTTCATCGGCGTCGGCGAAAAGGTCGAGGACCTGCAGC
CGTTCAACGCCGTGGAATTCGCGGACGCGCTATTCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (187-385)

• SRP54-type protein, helical bundle domain (SRP54_N) (104-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.632	100	0.57