Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   JG535_RS07065 Genome accession   NZ_CP066746
Coordinates   1397892..1398203 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain CJP19-D445 isolate CFSAN091031     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392892..1403203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG535_RS07045 (JG535_07045) ctsE 1393761..1395320 (-) 1560 WP_199398762.1 GspE/PulE family protein Machinery gene
  JG535_RS07050 (JG535_07050) ctsX 1395310..1395897 (-) 588 WP_002851370.1 membrane protein Machinery gene
  JG535_RS07055 (JG535_07055) ctsP 1395901..1396509 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  JG535_RS07060 (JG535_07060) ctsD 1396502..1397914 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  JG535_RS07065 (JG535_07065) ctsR 1397892..1398203 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  JG535_RS07070 (JG535_07070) nifJ 1398227..1401787 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  JG535_RS07075 (JG535_07075) - 1401880..1402521 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=522323 JG535_RS07065 WP_002855438.1 1397892..1398203(-) (ctsR) [Campylobacter jejuni strain CJP19-D445 isolate CFSAN091031]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=522323 JG535_RS07065 WP_002855438.1 1397892..1398203(-) (ctsR) [Campylobacter jejuni strain CJP19-D445 isolate CFSAN091031]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1