Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   JG534_RS05905 Genome accession   NZ_CP066745
Coordinates   1139877..1140836 (+) Length   319 a.a.
NCBI ID   WP_002868600.1    Uniprot ID   A0A5T0IKQ4
Organism   Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134877..1145836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG534_RS05875 (JG534_05875) neuC 1135467..1136591 (+) 1125 WP_199397498.1 UDP-N-acetylglucosamine 2-epimerase -
  JG534_RS05880 (JG534_05880) - 1136584..1137126 (+) 543 Protein_1144 beta-1,4-N-acetylgalactosaminyltransferase -
  JG534_RS05885 (JG534_05885) - 1137198..1137530 (+) 333 WP_172782853.1 hypothetical protein -
  JG534_RS05890 (JG534_05890) - 1137527..1138192 (+) 666 WP_002868603.1 acylneuraminate cytidylyltransferase family protein -
  JG534_RS05895 (JG534_05895) - 1138315..1138947 (+) 633 WP_002868602.1 CatB-related O-acetyltransferase -
  JG534_RS05900 (JG534_05900) waaV 1139006..1139818 (-) 813 WP_002868601.1 glycosyltransferase family 2 protein -
  JG534_RS05905 (JG534_05905) waaF 1139877..1140836 (+) 960 WP_002868600.1 lipopolysaccharide heptosyltransferase II Regulator
  JG534_RS05910 (JG534_05910) gmhA 1140817..1141377 (-) 561 WP_002868599.1 D-sedoheptulose 7-phosphate isomerase -
  JG534_RS05915 (JG534_05915) rfaE1 1141374..1142759 (-) 1386 WP_002868598.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  JG534_RS05920 (JG534_05920) rfaD 1142752..1143705 (-) 954 WP_002868597.1 ADP-glyceromanno-heptose 6-epimerase -
  JG534_RS05925 (JG534_05925) gmhB 1143706..1144267 (-) 562 Protein_1153 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  JG534_RS05930 (JG534_05930) - 1144348..1144650 (+) 303 WP_002852762.1 cytochrome c -
  JG534_RS05935 (JG534_05935) ccoS 1144673..1144879 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36754.48 Da        Isoelectric Point: 10.3627

>NTDB_id=522284 JG534_RS05905 WP_002868600.1 1139877..1140836(+) (waaF) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAIYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=522284 JG534_RS05905 WP_002868600.1 1139877..1140836(+) (waaF) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACTTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGATTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0IKQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.044

100

0.94