Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JFY71_RS07140 Genome accession   NZ_CP066744
Coordinates   1446110..1447936 (+) Length   608 a.a.
NCBI ID   WP_243660123.1    Uniprot ID   -
Organism   Miniphocaeibacter halophilus strain AMB_01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1441110..1452936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY71_RS07120 (JFY71_07075) hydE 1441699..1442739 (-) 1041 WP_243660119.1 [FeFe] hydrogenase H-cluster radical SAM maturase HydE -
  JFY71_RS07125 (JFY71_07080) cysK 1442849..1443775 (+) 927 WP_243660120.1 cysteine synthase A -
  JFY71_RS07130 (JFY71_07085) - 1443914..1444351 (+) 438 WP_243660121.1 MarR family winged helix-turn-helix transcriptional regulator -
  JFY71_RS07135 (JFY71_07090) rcrP 1444362..1446113 (+) 1752 WP_243660122.1 ABC transporter ATP-binding protein Regulator
  JFY71_RS07140 (JFY71_07095) rcrQ 1446110..1447936 (+) 1827 WP_243660123.1 ABC transporter ATP-binding protein Regulator
  JFY71_RS07145 (JFY71_07100) namA 1448030..1449040 (+) 1011 WP_243660124.1 NADPH dehydrogenase NamA -
  JFY71_RS07150 (JFY71_07105) - 1449051..1450685 (+) 1635 WP_243660125.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  JFY71_RS07155 (JFY71_07110) - 1450708..1451436 (-) 729 WP_243660126.1 amino acid ABC transporter ATP-binding protein -
  JFY71_RS07160 (JFY71_07115) - 1451429..1452097 (-) 669 WP_243660127.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 67880.46 Da        Isoelectric Point: 6.2905

>NTDB_id=522264 JFY71_RS07140 WP_243660123.1 1446110..1447936(+) (rcrQ) [Miniphocaeibacter halophilus strain AMB_01]
MKKNRELRKRNSFAANTQSGKYAKAKDFKKAWGQLLGYFKVYGIQTIVAIIFSFVGTIMLLNGPRRLGEISDLILAGIKG
EMDFAAIEKICYTLVALYLIGAGLLYLQEFFMVTVIQGVSKKLRKDISIKINKLPLRYFDSTTLGDIMSRATNDVDLISQ
SLNQSIGSLAGAIAMFFGSLYMMFRTNPILTLTAIASTIVGFSLMIIIMSKSQKYFTRQQQSLGEMNGYVEEMYGAHTII
KVYNAEGEIKEEFNEINDDLYDSAWKSQFISGIMNPIMGFIGNFGYVAVSVVGAIMVAKGMMNFGVIVSFMIYIRQFTNP
LTTIAQAATSLQSTAAASERVFEFLGEEELEDESYKTKSINPKEVNGNVEFEHVRFGYDEDKIIIKDFSAEAKAGQKVAI
VGPTGAGKTTLVNLLMRFYELNSGKISVDGVDIKEITRENVHDLFCMVLQDTWIFEGTIKENIKYSKTNVSDEEVVKACK
AVGLDHYIRTLPKGYNTVLDNKTNLSQGQKQLMTIARAMVENAPMLILDEATSSVDTRTEVIIQKAMDKLMEGRTSFVIA
HRLSTIKNSDMIFVMDNGDIIESGNHEELMAKNGFYTNLYNSQFEQAG

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=522264 JFY71_RS07140 WP_243660123.1 1446110..1447936(+) (rcrQ) [Miniphocaeibacter halophilus strain AMB_01]
ATGAAAAAAAATAGAGAATTAAGAAAAAGAAACTCTTTTGCTGCAAATACTCAAAGTGGTAAATATGCTAAAGCAAAAGA
CTTTAAAAAAGCTTGGGGACAATTATTAGGATATTTTAAAGTATACGGAATTCAAACTATTGTTGCTATAATATTCTCCT
TTGTTGGAACGATTATGTTATTAAATGGACCAAGAAGATTAGGGGAAATTTCAGATTTAATTTTGGCCGGAATAAAAGGT
GAAATGGATTTTGCAGCCATTGAAAAAATTTGTTATACCTTAGTAGCTCTTTATTTAATAGGAGCAGGACTCTTGTATTT
ACAAGAATTTTTTATGGTTACAGTAATTCAAGGAGTATCTAAAAAATTAAGAAAAGATATATCAATTAAAATCAATAAAC
TTCCTTTAAGATATTTTGACTCAACTACTCTTGGTGACATAATGAGTAGGGCAACTAATGATGTTGATTTAATCAGTCAA
TCTTTAAATCAAAGTATAGGCTCTTTGGCAGGAGCAATAGCGATGTTTTTTGGTTCTTTATATATGATGTTTAGAACTAA
TCCTATATTAACATTAACGGCCATTGCATCTACAATAGTAGGCTTTAGTTTAATGATAATAATAATGTCTAAATCACAAA
AATATTTTACAAGACAACAACAATCACTAGGTGAAATGAATGGTTATGTTGAAGAGATGTACGGAGCACATACTATTATT
AAAGTTTACAATGCTGAAGGGGAAATTAAAGAGGAGTTTAATGAAATAAATGATGACCTGTACGATTCTGCATGGAAATC
ACAATTTATTTCAGGTATAATGAATCCAATTATGGGTTTTATTGGTAACTTTGGGTATGTAGCAGTATCAGTTGTAGGTG
CAATAATGGTAGCAAAAGGAATGATGAACTTTGGTGTTATAGTTTCCTTTATGATCTATATTAGACAGTTTACAAATCCT
TTAACTACAATAGCTCAAGCAGCAACAAGCTTACAATCTACAGCAGCAGCATCAGAAAGGGTTTTTGAATTTTTAGGAGA
AGAAGAATTAGAAGATGAATCCTATAAAACTAAATCCATCAACCCTAAAGAGGTCAATGGAAATGTTGAGTTTGAACATG
TAAGATTTGGCTACGACGAAGATAAAATAATAATTAAAGATTTTTCTGCAGAGGCAAAGGCCGGTCAAAAAGTTGCAATT
GTAGGACCGACAGGAGCAGGAAAAACGACTTTAGTTAATTTGTTAATGAGATTTTATGAATTGAATAGTGGAAAAATATC
TGTTGACGGAGTAGATATAAAAGAAATTACAAGGGAAAATGTACATGATTTATTCTGTATGGTATTACAAGACACTTGGA
TATTTGAAGGTACAATTAAAGAGAATATAAAATATAGTAAGACCAATGTTTCAGATGAAGAGGTTGTAAAAGCATGTAAA
GCTGTTGGACTAGATCATTATATTAGAACTCTACCAAAAGGATATAATACGGTTTTAGATAATAAGACAAATTTATCCCA
AGGACAAAAACAGTTAATGACAATAGCAAGAGCAATGGTGGAAAATGCTCCAATGCTAATACTTGATGAGGCAACAAGTT
CTGTAGATACTAGAACAGAAGTTATAATTCAAAAAGCCATGGATAAACTTATGGAAGGAAGGACATCCTTTGTTATTGCC
CATAGATTATCTACAATAAAAAATTCCGACATGATATTTGTTATGGATAATGGTGACATAATAGAAAGCGGAAACCATGA
AGAATTAATGGCTAAAAATGGATTTTATACAAATCTATACAACAGTCAATTTGAACAGGCAGGTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-321)

ABC transporter (ABC_tran)

(386-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.574

95.066

0.538