Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JFY71_RS07135 Genome accession   NZ_CP066744
Coordinates   1444362..1446113 (+) Length   583 a.a.
NCBI ID   WP_243660122.1    Uniprot ID   -
Organism   Miniphocaeibacter halophilus strain AMB_01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439362..1451113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY71_RS07110 (JFY71_07065) - 1440036..1440977 (+) 942 WP_243660117.1 LysR family transcriptional regulator -
  JFY71_RS07115 (JFY71_07070) fdhD 1440989..1441702 (+) 714 WP_243660118.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  JFY71_RS07120 (JFY71_07075) hydE 1441699..1442739 (-) 1041 WP_243660119.1 [FeFe] hydrogenase H-cluster radical SAM maturase HydE -
  JFY71_RS07125 (JFY71_07080) cysK 1442849..1443775 (+) 927 WP_243660120.1 cysteine synthase A -
  JFY71_RS07130 (JFY71_07085) - 1443914..1444351 (+) 438 WP_243660121.1 MarR family winged helix-turn-helix transcriptional regulator -
  JFY71_RS07135 (JFY71_07090) rcrP 1444362..1446113 (+) 1752 WP_243660122.1 ABC transporter ATP-binding protein Regulator
  JFY71_RS07140 (JFY71_07095) rcrQ 1446110..1447936 (+) 1827 WP_243660123.1 ABC transporter ATP-binding protein Regulator
  JFY71_RS07145 (JFY71_07100) namA 1448030..1449040 (+) 1011 WP_243660124.1 NADPH dehydrogenase NamA -
  JFY71_RS07150 (JFY71_07105) - 1449051..1450685 (+) 1635 WP_243660125.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 65343.11 Da        Isoelectric Point: 6.0508

>NTDB_id=522263 JFY71_RS07135 WP_243660122.1 1444362..1446113(+) (rcrP) [Miniphocaeibacter halophilus strain AMB_01]
MLRLLKFLKPREWFFFLINVVFISTQVFLDLKIPDYMTQITQILQTNGSLGEIINIGIRMVICALGSLGAAIICGFFAAK
IAAVFGKRLRGTVFNRVQEFSKEEIKQFSTDSLITRSTNDITQIQMIIAIGAQMMIKAPIMAVWAILKIYGKNWQWSLTT
GIAVLIMMVVIAIIGIFALPRFRRVQKLIDSINRVIRENLTGIRVVKAYNAEEYQENKFEKANEDLTKNNLFTGRLMGML
NPMMRILMNGIGLAIYWMGAYLIYNAGYMEKINLFSDMVVFTSYATQVVVSFMMLTMIFIMMPRAQVSANRINEVLDTKP
SILDGDVTEVKDNIGEVEFKNVCFKYPDAEEYVLKNINFKVKPGETLAIIGSTGSGKSTIVDLIPRFYDATEGEVLVNGI
NVRDYKLNILDNYIGYVSQKTILVSGTIRSNIDYGDNGKGNITDEAIQNALEIAQAADFVNKLEDGVDSYVAQGGTNFSG
GQKQRISIARAIARDPAIYIFDDSFSALDLKTDKMLRQALDRETSHATNIIVSQRIGSIKNADKILVMEDGEMAGLGTHE
ELIKDCKVYQEIAYSQLSQEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=522263 JFY71_RS07135 WP_243660122.1 1444362..1446113(+) (rcrP) [Miniphocaeibacter halophilus strain AMB_01]
ATGTTAAGGTTATTAAAATTCTTAAAACCTAGAGAGTGGTTTTTCTTTTTAATTAACGTTGTGTTTATATCTACTCAGGT
ATTTTTAGATTTGAAAATACCGGATTATATGACACAAATAACACAAATACTACAAACAAATGGTTCCTTAGGTGAAATTA
TTAATATTGGTATTAGAATGGTAATTTGTGCACTAGGAAGTTTAGGAGCAGCTATAATTTGTGGTTTTTTTGCAGCAAAA
ATAGCCGCAGTATTTGGTAAACGTCTTAGAGGAACGGTTTTCAATAGAGTACAAGAATTTTCAAAAGAAGAAATCAAACA
ATTTTCTACAGATAGTTTAATTACAAGATCAACTAATGATATAACTCAAATTCAAATGATTATTGCAATAGGTGCACAAA
TGATGATAAAGGCACCAATAATGGCTGTATGGGCAATTTTAAAAATTTATGGTAAAAATTGGCAGTGGTCACTAACTACA
GGAATAGCCGTTTTGATTATGATGGTAGTAATTGCAATAATTGGAATATTTGCTTTACCAAGATTTAGAAGAGTACAAAA
ACTAATAGACTCTATAAACAGAGTAATTAGAGAGAATCTTACTGGAATAAGAGTGGTTAAAGCATATAACGCTGAAGAGT
ATCAAGAAAATAAATTTGAAAAAGCAAATGAAGACTTAACTAAAAATAATTTATTTACAGGAAGATTAATGGGAATGCTC
AATCCAATGATGAGAATCTTAATGAATGGTATAGGTTTGGCTATTTATTGGATGGGAGCATATTTAATTTATAATGCCGG
ATATATGGAAAAAATTAATTTGTTTAGCGATATGGTAGTTTTTACATCCTATGCAACTCAAGTAGTAGTTTCATTCATGA
TGTTAACTATGATTTTTATAATGATGCCAAGGGCCCAAGTGTCTGCAAACAGAATTAATGAAGTCCTAGATACGAAACCT
TCAATTCTTGATGGTGATGTTACAGAAGTTAAGGATAATATTGGAGAAGTTGAATTTAAAAATGTATGTTTCAAATATCC
TGATGCAGAAGAATATGTTTTGAAAAACATAAATTTTAAAGTTAAACCGGGAGAAACACTGGCAATAATAGGTTCAACAG
GTAGTGGTAAATCTACAATAGTAGATTTAATTCCAAGATTTTATGACGCTACTGAAGGTGAGGTACTTGTAAATGGAATT
AATGTAAGGGATTATAAATTAAATATATTAGATAATTATATAGGATATGTTTCACAAAAGACCATATTGGTTTCCGGAAC
CATAAGATCTAATATTGACTATGGTGACAATGGAAAAGGAAATATTACAGATGAAGCTATACAAAACGCTTTAGAAATTG
CTCAAGCTGCAGATTTTGTTAATAAATTAGAGGACGGAGTAGACTCCTATGTAGCACAGGGAGGAACTAATTTCTCCGGT
GGACAAAAACAAAGAATTTCTATAGCAAGAGCCATAGCAAGAGATCCTGCAATATATATATTCGATGATTCTTTTTCAGC
TTTAGACCTTAAAACCGATAAGATGTTAAGGCAAGCTTTAGATAGAGAAACAAGTCATGCAACTAATATTATTGTTTCTC
AAAGAATTGGATCAATAAAAAACGCAGATAAAATACTTGTTATGGAAGATGGGGAAATGGCTGGTTTAGGCACTCATGAA
GAACTTATTAAGGATTGTAAGGTTTATCAGGAAATAGCTTATTCCCAATTATCACAGGAGGAACTTGCATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-291)

ABC transporter (ABC_tran)

(354-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.586

100

0.518