Detailed information NTG0522243

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K5B69_RS07290
• Genome accession: NZ_CP081346
• Coordinates: 1534442..1535446 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5419
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1529442..1540446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5B69_RS07260 (K5B69_07260)	fghA	1529534..1530385 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
K5B69_RS07265 (K5B69_07265)	ispF	1530456..1530929 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K5B69_RS07270 (K5B69_07270)	truD	1530926..1531993 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
K5B69_RS07275 (K5B69_07275)	surE	1531981..1532730 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
K5B69_RS07280 (K5B69_07280)	-	1532763..1533398 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K5B69_RS07285 (K5B69_07285)	-	1533444..1534337 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
K5B69_RS07290 (K5B69_07290)	rpoS	1534442..1535446 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
K5B69_RS07295 (K5B69_07295)	fdxA	1535873..1536196 (-)	324	WP_003092272.1	ferredoxin FdxA	-
K5B69_RS07300 (K5B69_07300)	mutS	1536263..1538803 (-)	2541	WP_003163273.1	DNA mismatch repair protein MutS	-
K5B69_RS07305 (K5B69_07305)	-	1539058..1540158 (+)	1101	WP_071540874.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=522243 K5B69_RS07290 WP_003113871.1 1534442..1535446(+) (rpoS) [Pseudomonas aeruginosa strain SE5419]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=522243 K5B69_RS07290 WP_003113871.1 1534442..1535446(+) (rpoS) [Pseudomonas aeruginosa strain SE5419]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653