Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   JGY90_RS09550 Genome accession   NZ_CP066726
Coordinates   1973939..1974502 (-) Length   187 a.a.
NCBI ID   WP_017722273.1    Uniprot ID   A0A2T4PJ80
Organism   Staphylococcus xylosus strain TMW 2.1324     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968939..1979502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY90_RS09520 (JGY90_09480) - 1969584..1970522 (+) 939 WP_101103731.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  JGY90_RS09525 (JGY90_09485) - 1970597..1971166 (-) 570 WP_101103733.1 GNAT family N-acetyltransferase -
  JGY90_RS09530 (JGY90_09490) - 1971347..1971559 (+) 213 WP_029379120.1 TM2 domain-containing protein -
  JGY90_RS09535 (JGY90_09495) isaB 1972166..1972657 (-) 492 WP_107538087.1 immunodominant staphylococcal antigen IsaB family protein -
  JGY90_RS09550 (JGY90_09510) comK/comK1 1973939..1974502 (-) 564 WP_017722273.1 competence protein ComK Regulator
  JGY90_RS09555 (JGY90_09515) - 1974755..1974973 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  JGY90_RS09560 (JGY90_09520) - 1975073..1976059 (-) 987 WP_042362968.1 lipoate--protein ligase -
  JGY90_RS09565 (JGY90_09525) - 1976259..1976444 (+) 186 WP_002483735.1 DUF2187 family protein -
  JGY90_RS09570 (JGY90_09530) - 1976450..1977052 (+) 603 WP_225518046.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  JGY90_RS09575 (JGY90_09535) - 1977119..1978627 (-) 1509 WP_069795866.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21879.23 Da        Isoelectric Point: 9.5361

>NTDB_id=522183 JGY90_RS09550 WP_017722273.1 1973939..1974502(-) (comK/comK1) [Staphylococcus xylosus strain TMW 2.1324]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=522183 JGY90_RS09550 WP_017722273.1 1973939..1974502(-) (comK/comK1) [Staphylococcus xylosus strain TMW 2.1324]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGGCAATATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCTAAAATCATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCTATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATTCATTATGTACA
TAATATTAGGCCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGTATGCATCATCAATATTTAAATGGTATATACTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
CCTGATTCGCCGATTGATTATACTAAACCACAATTAAATATATATGAAGCATTGGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4PJ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.738

97.861

0.545
  comK/comK1 Staphylococcus aureus N315

55.738

97.861

0.545