Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JGY88_RS12150 Genome accession   NZ_CP066721
Coordinates   2505051..2506421 (-) Length   456 a.a.
NCBI ID   WP_017723050.1    Uniprot ID   A0A2T4QHV3
Organism   Staphylococcus xylosus strain 2.1523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2500051..2511421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS12135 (JGY88_12075) cysE 2501043..2501693 (-) 651 WP_081328116.1 serine O-acetyltransferase -
  JGY88_RS12140 (JGY88_12080) gltX 2502037..2503491 (-) 1455 WP_225486591.1 glutamate--tRNA ligase -
  JGY88_RS12145 (JGY88_12085) - 2503914..2504972 (-) 1059 WP_101104092.1 PIN/TRAM domain-containing protein -
  JGY88_RS12150 (JGY88_12090) radA 2505051..2506421 (-) 1371 WP_017723050.1 DNA repair protein RadA Machinery gene
  JGY88_RS12155 (JGY88_12095) - 2506763..2509225 (-) 2463 WP_101104093.1 ATP-dependent Clp protease ATP-binding subunit -
  JGY88_RS12160 (JGY88_12100) - 2509239..2510249 (-) 1011 WP_029377943.1 protein arginine kinase -
  JGY88_RS12165 (JGY88_12105) - 2510242..2510793 (-) 552 WP_042363311.1 UvrB/UvrC motif-containing protein -
  JGY88_RS12170 (JGY88_12110) - 2510810..2511271 (-) 462 WP_029377945.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50406.90 Da        Isoelectric Point: 7.2146

>NTDB_id=522153 JGY88_RS12150 WP_017723050.1 2505051..2506421(-) (radA) [Staphylococcus xylosus strain 2.1523]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDNISKVQKLNDIKHETTPRVKTNSEEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSKNVLYITGEESLNQTKLRAERLDEDSSQLNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQLNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMQQTGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIVVATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRVIIPESNIGGWQFPNDIKVIGVKNVHEALKYALTKQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=522153 JGY88_RS12150 WP_017723050.1 2505051..2506421(-) (radA) [Staphylococcus xylosus strain 2.1523]
TTGGCTAAAAAGAAAGTAATTTTTGAATGTATGGCCTGTGGCTACCAGTCTCCAAAGTGGATGGGGAAATGCCCAAACTG
TGGTGGTTGGAATCAAATGGAAGAAATAGTCGAACAAAAGGCCGCGAGTCCAAAACATGGCGTACGCAGTCGAGACAATA
TTTCTAAAGTGCAAAAATTAAATGACATTAAACATGAAACAACGCCACGAGTAAAAACAAACTCTGAAGAATTTAATAGA
GTGCTTGGCGGCGGTATAGTAAATGGTTCGCTAGTATTGATAGGTGGCGATCCAGGTATTGGTAAATCTACATTACTCTT
ACAAATTTGTGCAGCATTATCACAATCTAAAAATGTGCTGTATATTACAGGTGAAGAATCGTTAAATCAAACGAAATTAA
GAGCAGAAAGGTTAGACGAGGACTCAAGTCAATTAAATGTGTTTGCTGAAACAGATTTAGAAGTTATACATGAAACAGTT
AAGCAACTCAAACCAGATTTACTTGTAGTAGACTCAATCCAAACTATTTTTCATCCAGAAATTAGTTCGGCACCAGGTTC
TGTGTCGCAAGTTAGAGAAAGTACGCAAAGTTTAATGAATATAGCTAAACAATTGAATATAGCTACATTTATAGTGGGAC
ATGTTACGAAAGAAGGCCAAATAGCTGGCCCGCGTTTACTCGAACACATGGTGGATACAGTTCTATACTTTGAAGGTGAC
GAGCATCATGCGTATCGTATTTTAAGAGCAGTTAAAAACCGTTTTGGCTCTACGAATGAGATGGGTATCTTTGAAATGCA
ACAAACTGGATTAAAAGGAGTTAAAAACCCGTCGGAAATGTTCCTTGAAGAACGTTCGACTAATGTGCCTGGGTCAACCA
TTGTTTCTACGATGGAAGGCACGAGACCATTACTTATAGAAGTACAAGCGTTAGTGACGCCAACTACATTTAATAATCCA
AGACGTATGGCGACAGGTATCGATCATAATCGATTGAGTTTGCTCATGGCAGTGTTAGAAAAGAAAGAGAATTATTTACT
ACAACAACAGGATGCTTATATTAAAGTAGCAGGTGGAGTACGTTTAACAGAACCTGCAGTAGATTTAGGTATTGTTGTTG
CGACGGCTTCAAGTTTCAAAGATTTAACAGTTGATGGTTTAGACTGCTTTATTGGAGAAGTAGGACTCACAGGGGAAGTT
AGACGTGTTTCGCGTATAGAGCAACGTGTACAAGAAGCGGAAAAATTAGGGTTTAAGCGCGTAATTATTCCAGAATCAAA
TATTGGTGGATGGCAATTTCCAAATGACATTAAGGTTATTGGTGTTAAGAATGTCCATGAAGCATTAAAATATGCACTAA
CAAAACAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4QHV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

100

0.654
  radA Streptococcus pneumoniae Rx1

60

98.684

0.592
  radA Streptococcus pneumoniae D39

60

98.684

0.592
  radA Streptococcus pneumoniae R6

60

98.684

0.592
  radA Streptococcus pneumoniae TIGR4

60

98.684

0.592
  radA Streptococcus mitis NCTC 12261

60

98.684

0.592
  radA Streptococcus mitis SK321

60

98.684

0.592