Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JGY88_RS06370 Genome accession   NZ_CP066721
Coordinates   1331148..1333535 (+) Length   795 a.a.
NCBI ID   WP_225486904.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 2.1523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1326148..1338535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS06350 (JGY88_06310) sal 1326393..1328024 (+) 1632 WP_101104228.1 Sal family ABC-F type ribosomal protection protein -
  JGY88_RS06355 (JGY88_06315) - 1328085..1329230 (+) 1146 WP_069794303.1 cysteine desulfurase family protein -
  JGY88_RS06360 (JGY88_06320) mnmA 1329231..1330343 (+) 1113 WP_042362572.1 tRNA 2-thiouridine(34) synthase MnmA -
  JGY88_RS06365 (JGY88_06325) - 1330476..1331144 (+) 669 WP_047172281.1 tetratricopeptide repeat protein -
  JGY88_RS06370 (JGY88_06330) recD2 1331148..1333535 (+) 2388 WP_225486904.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JGY88_RS06375 (JGY88_06335) alaS 1333884..1336514 (+) 2631 WP_225486905.1 alanine--tRNA ligase -
  JGY88_RS06380 (JGY88_06340) - 1336581..1336841 (+) 261 WP_101104232.1 IreB family regulatory phosphoprotein -
  JGY88_RS06385 (JGY88_06345) ruvX 1336845..1337273 (+) 429 WP_070051007.1 Holliday junction resolvase RuvX -
  JGY88_RS06390 (JGY88_06350) - 1337290..1337622 (+) 333 WP_029377133.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89671.25 Da        Isoelectric Point: 4.5267

>NTDB_id=522140 JGY88_RS06370 WP_225486904.1 1331148..1333535(+) (recD2) [Staphylococcus xylosus strain 2.1523]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVEQKPYQLVYDVKGIGFNKADTLARNVGIQFNDTERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIEIQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYANSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCVFLKAYFNNDKETESDEVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=522140 JGY88_RS06370 WP_225486904.1 1331148..1333535(+) (recD2) [Staphylococcus xylosus strain 2.1523]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGAGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTCCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACGCATGCGAAATATGGTAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGTAA
AAAAACAGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTACCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATTATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGCGAAACACTTAATGT
AGTTGAACAGAAACCTTATCAACTTGTATATGACGTCAAAGGTATTGGTTTTAATAAGGCGGACACATTAGCCCGTAATG
TCGGCATTCAATTTAACGATACAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAATGTATAAAACAAGGA
CATACTTATTTACCTACGAATAATGTACTAGAGATGACTCAAGATATGTTATCACAACCACCAGGTGAATTAATAGAAAT
ACAGCAGCTTGAGCAAGTTTTACAGGATTTAGTCAATGACACGAAATTAATTCAACAAGAAAATGAAGTTGCGATTCCAA
GTCTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTACTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAAATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAACTCTAAAATAATGTTACTGACCGGTGGCCCAGGTACAGGGAAAACTACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTTTATCATTAGATTATGACGATTATCAAAATGATGATTATCCAGTAGTTCTAGGT
GCGCCAACTGGACGTGCATCGAAGCGTTTGTCAGAGTCAACTGGTTTAGAGGCTATGACGATACATCGCTTAATTGGTTG
GAATCAAGATACGCAACCAGAAGATATTTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCTATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCGCAAGTTATACTAGTCGGTGATGAAGATCAA
CTGCCATCTGTTGGACCTGGACAAGTATTTAAAGATTTAATTGATTCGAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGTTCAAGTATTATAGAATTAGCGCATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GATTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCCTCAGTTGTTGAAAAAGTGGTATCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCCCCGATGTATAAAGGCTCTGCAGGTATTAAGAAACTAAATAC
AGTATTGCAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTTGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTTGTTAATCGACCAAGCGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTTTTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAATTGACGCATGCCTATTGCACTTCAATCCATAAGTCACAAGGATCAGAATTTCCAATCGTTATTATGCCTATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACACGTGCCAAACAGTCACTTGTGTTCTTA
GGAGATCCACAAGCATTTGATATTGGACTAAAGACACATGGCCAAGTGAGAATGACGCAATTGTGTGTGTTTCTTAAAGC
GTATTTTAATAATGATAAAGAAACTGAAAGCGATGAAGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.252

99.874

0.502