Detailed information NTG0522140

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K5B02_RS07130
• Genome accession: NZ_CP081345
• Coordinates: 1526065..1527069 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F291007
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1521065..1532069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5B02_RS07100 (K5B02_07100)	fghA	1521157..1522008 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
K5B02_RS07105 (K5B02_07105)	ispF	1522079..1522552 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K5B02_RS07110 (K5B02_07110)	truD	1522549..1523616 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
K5B02_RS07115 (K5B02_07115)	surE	1523604..1524353 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
K5B02_RS07120 (K5B02_07120)	-	1524386..1525021 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K5B02_RS07125 (K5B02_07125)	-	1525067..1525960 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
K5B02_RS07130 (K5B02_07130)	rpoS	1526065..1527069 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
K5B02_RS07135 (K5B02_07135)	fdxA	1527496..1527819 (-)	324	WP_003092272.1	ferredoxin FdxA	-
K5B02_RS07140 (K5B02_07140)	mutS	1527886..1530453 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
K5B02_RS07145 (K5B02_07145)	-	1530579..1531586 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=522140 K5B02_RS07130 WP_003113871.1 1526065..1527069(+) (rpoS) [Pseudomonas aeruginosa strain F291007]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=522140 K5B02_RS07130 WP_003113871.1 1526065..1527069(+) (rpoS) [Pseudomonas aeruginosa strain F291007]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653