Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGY88_RS04700 Genome accession   NZ_CP066721
Coordinates   1005505..1006221 (-) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus xylosus strain 2.1523     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000505..1011221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS04680 (JGY88_04650) - 1001173..1001397 (+) 225 WP_042362355.1 sulfurtransferase TusA family protein -
  JGY88_RS04685 (JGY88_04655) - 1001977..1002939 (+) 963 WP_069794673.1 LacI family DNA-binding transcriptional regulator -
  JGY88_RS04690 (JGY88_04660) - 1003023..1004507 (+) 1485 WP_069810261.1 sucrose-6-phosphate hydrolase -
  JGY88_RS04695 (JGY88_04665) - 1004504..1005469 (+) 966 WP_069810263.1 carbohydrate kinase -
  JGY88_RS04700 (JGY88_04670) agrA 1005505..1006221 (-) 717 WP_029378924.1 quorum-sensing response regulator AgrA Regulator
  JGY88_RS04705 (JGY88_04675) agrC 1006234..1007529 (-) 1296 WP_069795726.1 quorum-sensing sensor histidine kinase AgrC -
  JGY88_RS04710 (JGY88_04680) agrD 1007559..1007696 (-) 138 WP_069795725.1 cyclic lactone autoinducer peptide AgrD -
  JGY88_RS04715 (JGY88_04685) - 1007699..1008268 (-) 570 WP_069810265.1 accessory gene regulator AgrB -
  JGY88_RS04720 (JGY88_04690) - 1009034..1009819 (-) 786 WP_225486832.1 carbon-nitrogen family hydrolase -
  JGY88_RS04725 (JGY88_04695) - 1010183..1010812 (-) 630 WP_069795723.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=522131 JGY88_RS04700 WP_029378924.1 1005505..1006221(-) (agrA) [Staphylococcus xylosus strain 2.1523]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=522131 JGY88_RS04700 WP_029378924.1 1005505..1006221(-) (agrA) [Staphylococcus xylosus strain 2.1523]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTCTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATTCAACTAGAAGCTGACATCAACGGTATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTTGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGATTAAAACTAC
TTTCAAAAGAAAGCAGTGTCGAGACAATAGAATTAAAACGTGGTAGCAATTCTATTTATGTACAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGTTTAATCGCACATCTCGATAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGTTTCGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGCGTAGTTTATTTTAAAAACAATGAACATTGTTATGCTTCTGTAAGAAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849