Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGY87_RS04650 Genome accession   NZ_CP066719
Coordinates   1002888..1003604 (-) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus xylosus strain TMW 2.1602     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 997888..1008604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY87_RS04630 (JGY87_04595) - 998553..998777 (+) 225 WP_225489536.1 sulfurtransferase TusA family protein -
  JGY87_RS04635 (JGY87_04600) - 999359..1000321 (+) 963 WP_186335564.1 LacI family DNA-binding transcriptional regulator -
  JGY87_RS04640 (JGY87_04605) - 1000406..1001890 (+) 1485 WP_186335565.1 sucrose-6-phosphate hydrolase -
  JGY87_RS04645 (JGY87_04610) - 1001887..1002852 (+) 966 WP_225489537.1 carbohydrate kinase -
  JGY87_RS04650 (JGY87_04615) agrA 1002888..1003604 (-) 717 WP_029378924.1 quorum-sensing response regulator AgrA Regulator
  JGY87_RS04655 (JGY87_04620) agrC 1003617..1004912 (-) 1296 WP_217972613.1 quorum-sensing sensor histidine kinase AgrC -
  JGY87_RS04660 (JGY87_04625) agrD 1004938..1005075 (-) 138 WP_029378926.1 cyclic lactone autoinducer peptide AgrD -
  JGY87_RS04665 (JGY87_04630) - 1005078..1005647 (-) 570 WP_029378927.1 accessory gene regulator AgrB -
  JGY87_RS04670 (JGY87_04635) - 1006414..1007199 (-) 786 WP_029378928.1 carbon-nitrogen family hydrolase -
  JGY87_RS04675 (JGY87_04640) - 1007564..1008193 (-) 630 WP_029378929.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=522098 JGY87_RS04650 WP_029378924.1 1002888..1003604(-) (agrA) [Staphylococcus xylosus strain TMW 2.1602]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=522098 JGY87_RS04650 WP_029378924.1 1002888..1003604(-) (agrA) [Staphylococcus xylosus strain TMW 2.1602]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTTTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATTCAACTAGAAGCTGACATCAACGGTATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTGGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGACTAAAACTAC
TTTCAAAAGAAAGCAGCGTCGAAACAATAGAATTAAAACGTGGTAGCAATTCTATTTATGTGCAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGCTTAATCGCACATCTCGACAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGTTTTGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGCGTAGTTTATTTTAAAAACAATGAGCATTGTTATGCTTCTGTAAGAAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849