Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K5A55_RS09120 Genome accession   NZ_CP081306
Coordinates   1889350..1890777 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain Ec1079     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1884350..1895777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A55_RS09090 (K5A55_09090) yeeZ 1884405..1885229 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  K5A55_RS09095 (K5A55_09095) yeeY 1885275..1886204 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K5A55_RS09100 (K5A55_09100) yoeI 1886419..1886481 (+) 63 WP_010723108.1 membrane protein YoeI -
  K5A55_RS09105 (K5A55_09105) plaP 1886471..1887829 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K5A55_RS09110 (K5A55_09110) tsuA 1888008..1889066 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  K5A55_RS09115 (K5A55_09115) tsuB 1889080..1889307 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K5A55_RS09120 (K5A55_09120) sbcB 1889350..1890777 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  K5A55_RS09125 (K5A55_09125) dacD 1890986..1892152 (+) 1167 WP_000830171.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K5A55_RS09130 (K5A55_09130) sbmC 1892271..1892744 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  K5A55_RS09135 (K5A55_09135) yeeA 1892943..1894001 (+) 1059 WP_001200891.1 FUSC family protein -
  K5A55_RS09140 (K5A55_09140) tmaR 1894173..1894502 (+) 330 WP_000450409.1 DUF496 family protein -
  K5A55_RS09145 (K5A55_09145) - 1894603..1894779 (-) 177 Protein_1794 EutP/PduV family microcompartment system protein -
  K5A55_RS09150 (K5A55_09150) cobU 1894961..1895506 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=522076 K5A55_RS09120 WP_000980607.1 1889350..1890777(-) (sbcB) [Escherichia coli strain Ec1079]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=522076 K5A55_RS09120 WP_000980607.1 1889350..1890777(-) (sbcB) [Escherichia coli strain Ec1079]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACTTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583