Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   K5A55_RS00275 Genome accession   NZ_CP081306
Coordinates   50590..51066 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain Ec1079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45590..56066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A55_RS00235 (K5A55_00235) setC 45733..46917 (-) 1185 WP_001172877.1 sugar efflux transporter -
  K5A55_RS00240 (K5A55_00240) rhuM 47347..47475 (-) 129 Protein_46 RhuM family protein -
  K5A55_RS00245 (K5A55_00245) - 47710..48555 (-) 846 WP_001274561.1 DUF4942 domain-containing protein -
  K5A55_RS00250 (K5A55_00250) - 48640..48837 (-) 198 WP_000772032.1 DUF957 domain-containing protein -
  K5A55_RS00255 (K5A55_00255) - 48857..49345 (-) 489 WP_000761716.1 DUF5983 family protein -
  K5A55_RS00260 (K5A55_00260) - 49342..49719 (-) 378 WP_001094437.1 TA system toxin CbtA family protein -
  K5A55_RS00265 (K5A55_00265) - 49766..50143 (-) 378 WP_001390338.1 type IV toxin-antitoxin system YeeU family antitoxin -
  K5A55_RS00270 (K5A55_00270) - 50306..50527 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  K5A55_RS00275 (K5A55_00275) radC 50590..51066 (-) 477 WP_001186747.1 RadC family protein Machinery gene
  K5A55_RS00280 (K5A55_00280) - 51082..51252 (-) 171 Protein_54 antirestriction protein -
  K5A55_RS00285 (K5A55_00285) - 51254..52018 (-) 765 Protein_55 ESPR-type extended signal peptide-containing protein -
  K5A55_RS00290 (K5A55_00290) - 52390..53118 (-) 729 Protein_56 GTPase family protein -
  K5A55_RS00295 (K5A55_00295) hha 53544..53755 (+) 212 Protein_57 hemolysin expression modulator Hha -
  K5A55_RS24740 - 54098..54295 (-) 198 WP_001545803.1 hypothetical protein -
  K5A55_RS00300 (K5A55_00300) - 54499..55068 (+) 570 WP_000148641.1 inovirus Gp2 family protein -
  K5A55_RS00305 (K5A55_00305) - 55234..55617 (+) 384 WP_000271020.1 putative zinc ribbon protein -
  K5A55_RS00310 (K5A55_00310) - 55614..56039 (+) 426 WP_032181455.1 putative zinc ribbon protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=522042 K5A55_RS00275 WP_001186747.1 50590..51066(-) (radC) [Escherichia coli strain Ec1079]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=522042 K5A55_RS00275 WP_001186747.1 50590..51066(-) (radC) [Escherichia coli strain Ec1079]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392