Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGZ25_RS03980 Genome accession   NZ_CP066717
Coordinates   901719..902435 (-) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DG072     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 896719..907435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ25_RS13930 - 897773..897887 (-) 115 Protein_770 ribose transporter RbsU -
  JGZ25_RS03965 (JGZ25_03965) - 898224..899171 (+) 948 WP_037542580.1 LacI family DNA-binding transcriptional regulator -
  JGZ25_RS03970 (JGZ25_03970) - 899227..900711 (+) 1485 WP_075773675.1 sucrose-6-phosphate hydrolase -
  JGZ25_RS03975 (JGZ25_03975) - 900715..901659 (+) 945 WP_037542584.1 carbohydrate kinase -
  JGZ25_RS03980 (JGZ25_03980) agrA 901719..902435 (-) 717 WP_037542586.1 LytTR family DNA-binding domain-containing protein Regulator
  JGZ25_RS03985 (JGZ25_03985) - 902449..903504 (-) 1056 WP_230493192.1 sensor histidine kinase -
  JGZ25_RS03990 (JGZ25_03990) - 903765..903902 (-) 138 WP_014613413.1 cyclic lactone autoinducer peptide -
  JGZ25_RS03995 (JGZ25_03995) - 903904..904470 (-) 567 WP_014613414.1 accessory gene regulator AgrB -
  JGZ25_RS04005 (JGZ25_04005) - 905227..906030 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=522026 JGZ25_RS03980 WP_037542586.1 901719..902435(-) (agrA) [Staphylococcus pseudintermedius strain DG072]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=522026 JGZ25_RS03980 WP_037542586.1 901719..902435(-) (agrA) [Staphylococcus pseudintermedius strain DG072]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGTGAACGCATGGTGTCCATTATTGAAAATTATATTATGATTGA
AGAGAAACCGATGGAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836