Detailed information NTG0521957

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K3T18_RS07805
• Genome accession: NZ_CP081287
• Coordinates: 1605047..1606051 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F092021
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1600047..1611051

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K3T18_RS07775 (K3T18_07775)	fghA	1600144..1600995 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
K3T18_RS07780 (K3T18_07780)	ispF	1601066..1601539 (+)	474	WP_221345522.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K3T18_RS07785 (K3T18_07785)	truD	1601536..1602603 (+)	1068	WP_029610725.1	tRNA pseudouridine(13) synthase TruD	-
K3T18_RS07790 (K3T18_07790)	surE	1602591..1603340 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
K3T18_RS07795 (K3T18_07795)	-	1603373..1604008 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K3T18_RS07800 (K3T18_07800)	-	1604054..1604947 (+)	894	WP_029610726.1	peptidoglycan DD-metalloendopeptidase family protein	-
K3T18_RS07805 (K3T18_07805)	rpoS	1605047..1606051 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
K3T18_RS07810 (K3T18_07810)	fdxA	1606478..1606801 (-)	324	WP_003092272.1	ferredoxin FdxA	-
K3T18_RS07815 (K3T18_07815)	mutS	1606868..1609435 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
K3T18_RS07820 (K3T18_07820)	-	1609561..1610568 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=521957 K3T18_RS07805 WP_003113871.1 1605047..1606051(+) (rpoS) [Pseudomonas aeruginosa strain F092021]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=521957 K3T18_RS07805 WP_003113871.1 1605047..1606051(+) (rpoS) [Pseudomonas aeruginosa strain F092021]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGAACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653