Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGZ50_RS03695 Genome accession   NZ_CP066713
Coordinates   826891..827607 (-) Length   238 a.a.
NCBI ID   WP_100006618.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DSP026     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 821891..832607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ50_RS03675 (JGZ50_03675) - 822944..823058 (-) 115 Protein_718 ribose transporter RbsU -
  JGZ50_RS03680 (JGZ50_03680) - 823396..824343 (+) 948 WP_199274911.1 LacI family DNA-binding transcriptional regulator -
  JGZ50_RS03685 (JGZ50_03685) - 824399..825883 (+) 1485 WP_100006620.1 sucrose-6-phosphate hydrolase -
  JGZ50_RS03690 (JGZ50_03690) - 825887..826831 (+) 945 WP_100006619.1 carbohydrate kinase -
  JGZ50_RS03695 (JGZ50_03695) agrA 826891..827607 (-) 717 WP_100006618.1 LytTR family DNA-binding domain-containing protein Regulator
  JGZ50_RS03700 (JGZ50_03700) - 827621..828484 (-) 864 WP_233276610.1 sensor histidine kinase -
  JGZ50_RS03705 (JGZ50_03705) - 828936..829073 (-) 138 WP_020219911.1 cyclic lactone autoinducer peptide -
  JGZ50_RS03710 (JGZ50_03710) - 829075..829641 (-) 567 WP_020219910.1 accessory gene regulator AgrB -
  JGZ50_RS03720 (JGZ50_03720) - 830398..831201 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28016.18 Da        Isoelectric Point: 5.4368

>NTDB_id=521921 JGZ50_RS03695 WP_100006618.1 826891..827607(-) (agrA) [Staphylococcus pseudintermedius strain DSP026]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=521921 JGZ50_RS03695 WP_100006618.1 826891..827607(-) (agrA) [Staphylococcus pseudintermedius strain DSP026]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGAAGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTACTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828