Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   K3176_RS25055 Genome accession   NZ_CP081202
Coordinates   5182552..5182917 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain P9W     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5177552..5187917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3176_RS25040 (K3176_25040) pilK 5178896..5179771 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  K3176_RS25045 (K3176_25045) pilJ 5179832..5181880 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  K3176_RS25050 (K3176_25050) - 5181965..5182501 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  K3176_RS25055 (K3176_25055) pilH 5182552..5182917 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  K3176_RS25060 (K3176_25060) pilG 5182964..5183371 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  K3176_RS25065 (K3176_25065) gshB 5183626..5184579 (+) 954 WP_003162014.1 glutathione synthase -
  K3176_RS25070 (K3176_25070) - 5184726..5185619 (+) 894 WP_003162015.1 energy transducer TonB -
  K3176_RS25075 (K3176_25075) - 5185668..5186237 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  K3176_RS25080 (K3176_25080) ruvX 5186237..5186671 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  K3176_RS25085 (K3176_25085) pyrR 5186783..5187295 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=521890 K3176_RS25055 WP_003084587.1 5182552..5182917(-) (pilH) [Pseudomonas aeruginosa strain P9W]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=521890 K3176_RS25055 WP_003084587.1 5182552..5182917(-) (pilH) [Pseudomonas aeruginosa strain P9W]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364