Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGZ40_RS03755 Genome accession   NZ_CP066712
Coordinates   844800..845516 (-) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain DSP027     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 839800..850516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ40_RS03740 (JGZ40_03690) - 841305..842252 (+) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -
  JGZ40_RS03745 (JGZ40_03695) - 842308..843792 (+) 1485 WP_187470855.1 sucrose-6-phosphate hydrolase -
  JGZ40_RS03750 (JGZ40_03700) - 843796..844740 (+) 945 WP_063278587.1 carbohydrate kinase -
  JGZ40_RS03755 (JGZ40_03705) agrA 844800..845516 (-) 717 WP_014613411.1 quorum-sensing response regulator AgrA Regulator
  JGZ40_RS03760 (JGZ40_03710) agrC 845530..846822 (-) 1293 WP_063285005.1 quorum-sensing sensor histidine kinase AgrC -
  JGZ40_RS03765 (JGZ40_03715) agrD 846845..846982 (-) 138 WP_020219911.1 cyclic lactone autoinducer peptide AgrD -
  JGZ40_RS03770 (JGZ40_03720) - 846984..847550 (-) 567 WP_020219910.1 accessory gene regulator AgrB -
  JGZ40_RS13365 (JGZ40_03725) - 847942..848019 (+) 78 WP_126511050.1 delta-lysin family phenol-soluble modulin -
  JGZ40_RS03775 (JGZ40_03730) - 848388..849707 (+) 1320 WP_101457945.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=521889 JGZ40_RS03755 WP_014613411.1 844800..845516(-) (agrA) [Staphylococcus pseudintermedius strain DSP027]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=521889 JGZ40_RS03755 WP_014613411.1 844800..845516(-) (agrA) [Staphylococcus pseudintermedius strain DSP027]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832