Detailed information    

insolico Bioinformatically predicted

Overview


Name   lqsT   Type   Regulator
Locus tag   LPV_RS13060 Genome accession   NC_018140
Coordinates   2925127..2926389 (+) Length   420 a.a.
NCBI ID   WP_014844654.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2920127..2931389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPV_RS16230 (LPV_2837) - 2920178..2920702 (-) 525 WP_229310239.1 hypothetical protein -
  LPV_RS13050 (LPV_2838) ceg32 2921010..2923838 (+) 2829 WP_014844652.1 Dot/Icm T4SS effector Ceg32/SidI -
  LPV_RS13055 (LPV_2839) mesI 2923840..2924730 (+) 891 WP_014844653.1 Dot/Icm T4SS effector metaeffector MesI -
  LPV_RS13060 (LPV_2840) lqsT 2925127..2926389 (+) 1263 WP_014844654.1 sensor histidine kinase Regulator
  LPV_RS13065 (LPV_2841) - 2926437..2927132 (-) 696 WP_014844655.1 iron-containing redox enzyme family protein -
  LPV_RS13070 (LPV_2843) sdjA 2927539..2929962 (-) 2424 WP_014844656.1 Dot/Icm T4SS effector SdjA -
  LPV_RS13075 (LPV_2844) dupB 2930034..2931227 (-) 1194 WP_080031456.1 Dot/Icm T4SS effector deubiquitinase DupB/LaiF -

Sequence


Protein


Download         Length: 420 a.a.        Molecular weight: 48630.04 Da        Isoelectric Point: 7.7049

>NTDB_id=52187 LPV_RS13060 WP_014844654.1 2925127..2926389(+) (lqsT) [Legionella pneumophila subsp. pneumophila]
MQRLKDIFTAIYQYLLKETEDASHQITLFGIVMMINYPLFGVFWKLEHFQLTEEFILRITAALLCACLAFNQFWPKQLLK
FLPVFWYIVLLFCLPYFFAYLTLINNGSTLWLMNCVSAIFFLLLVSSVLGALILLISGVGLAFFHFYILSNNQFVYIPGT
ISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAELQELIVERLNNPEVQKDLKENL
SKITRGIEMSNQLIRMQLNNIQRDKLDTSTFSIYSIKKLLKASLEEYPFKENQKSLIHLNDKNDFSIWIDEVGFKNMMWN
LLKNSLEYIEETHKGEISIWLEQGWEKENFNYLHIKDTAKGLNHKEYEKIFDFFYSGRKEGTGLGLAYCKLLMQAAGGDI
SCKGKKNEFAHFTLKFPKID

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=52187 LPV_RS13060 WP_014844654.1 2925127..2926389(+) (lqsT) [Legionella pneumophila subsp. pneumophila]
ATGCAAAGGTTAAAAGATATATTTACTGCAATTTACCAATACTTATTAAAAGAAACTGAAGATGCAAGCCACCAAATCAC
TTTATTTGGCATCGTCATGATGATTAATTACCCTCTTTTCGGAGTTTTCTGGAAACTGGAGCATTTTCAACTGACAGAAG
AATTTATTTTACGCATCACTGCAGCCCTCCTCTGTGCCTGTTTGGCATTTAATCAATTTTGGCCAAAACAATTATTAAAA
TTTCTACCTGTTTTTTGGTATATAGTTCTGCTCTTTTGTTTGCCTTACTTTTTTGCTTATTTGACTCTTATAAACAATGG
TTCGACTCTTTGGTTAATGAATTGCGTATCCGCTATCTTTTTTCTTTTATTGGTTTCCAGTGTATTGGGGGCTCTTATAT
TACTTATATCAGGTGTTGGACTTGCTTTTTTTCATTTTTATATTTTATCAAATAATCAGTTTGTCTATATCCCCGGAACC
ATATCACTTTTTAGTTTAATTGTTACGTTTATTGCAGCAATAATCATTGGTGCCTTGTTTGCGCGAGATAGAGAAATTAC
CTATGCCGGACGTTTATCGGGTATGCGCATGCTGGCTGGAAGTATCGCTCATGATTTAAGAACGCCGCTTGCCAGTATTT
ATTTACAAGCCGAATTACAGGAATTGATTGTCGAAAGATTAAATAATCCAGAAGTTCAAAAGGACCTGAAGGAAAATTTA
AGCAAAATTACTCGCGGCATAGAAATGAGTAATCAATTAATTCGTATGCAATTAAATAATATTCAACGAGACAAATTAGA
TACCAGTACATTTTCGATTTATTCCATCAAAAAATTGCTCAAAGCGTCTTTAGAGGAATACCCTTTCAAAGAAAATCAAA
AATCATTGATTCATTTAAATGATAAAAATGATTTTTCCATATGGATTGATGAAGTGGGGTTTAAAAATATGATGTGGAAT
TTGCTAAAAAATAGTCTGGAATATATTGAGGAAACCCATAAAGGCGAAATCTCTATCTGGCTAGAACAAGGATGGGAGAA
AGAGAATTTTAATTACCTCCATATAAAAGATACAGCTAAAGGTTTAAATCATAAAGAATATGAAAAAATATTTGATTTCT
TCTATTCTGGCAGAAAAGAAGGAACTGGTTTAGGCTTGGCCTATTGTAAACTTCTGATGCAAGCAGCAGGTGGTGATATT
TCCTGTAAAGGGAAAAAAAATGAATTCGCTCATTTCACTTTAAAATTCCCCAAAATTGATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

99.524

100

0.995


Multiple sequence alignment