Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGZ56_RS03800 Genome accession   NZ_CP066711
Coordinates   862036..862752 (-) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain DSP030     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 857036..867752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ56_RS03780 (JGZ56_03780) - 857224..858309 (-) 1086 WP_199274376.1 YeeE/YedE family protein -
  JGZ56_RS03785 (JGZ56_03785) - 858541..859488 (+) 948 WP_014613408.1 LacI family DNA-binding transcriptional regulator -
  JGZ56_RS03790 (JGZ56_03790) - 859544..861028 (+) 1485 WP_100006620.1 sucrose-6-phosphate hydrolase -
  JGZ56_RS03795 (JGZ56_03795) - 861032..861976 (+) 945 WP_110148494.1 carbohydrate kinase -
  JGZ56_RS03800 (JGZ56_03800) agrA 862036..862752 (-) 717 WP_014613411.1 LytTR family DNA-binding domain-containing protein Regulator
  JGZ56_RS03805 (JGZ56_03805) - 862766..863821 (-) 1056 WP_230493192.1 sensor histidine kinase -
  JGZ56_RS03810 (JGZ56_03810) - 864082..864219 (-) 138 WP_014613413.1 cyclic lactone autoinducer peptide -
  JGZ56_RS03815 (JGZ56_03815) - 864221..864787 (-) 567 WP_014613414.1 accessory gene regulator AgrB -
  JGZ56_RS03825 (JGZ56_03825) - 865544..866347 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=521859 JGZ56_RS03800 WP_014613411.1 862036..862752(-) (agrA) [Staphylococcus pseudintermedius strain DSP030]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=521859 JGZ56_RS03800 WP_014613411.1 862036..862752(-) (agrA) [Staphylococcus pseudintermedius strain DSP030]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCACATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832