Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LPV_RS12020 Genome accession   NC_018140
Coordinates   2705800..2706504 (+) Length   234 a.a.
NCBI ID   WP_015961431.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2700800..2711504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPV_RS11995 (LPV_2597) - 2702033..2702911 (+) 879 WP_011947171.1 lpg2327 family Dot/Icm T4SS effector -
  LPV_RS12000 (LPV_2598) - 2703174..2703557 (+) 384 WP_011947172.1 hypothetical protein -
  LPV_RS12005 (LPV_2599) - 2703751..2703981 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LPV_RS12010 (LPV_2600) - 2703962..2704858 (+) 897 WP_172635123.1 polyprenyl synthetase family protein -
  LPV_RS12015 (LPV_2601) bioC 2704902..2705756 (-) 855 WP_014844480.1 malonyl-ACP O-methyltransferase BioC -
  LPV_RS12020 (LPV_2602) comFC 2705800..2706504 (+) 705 WP_015961431.1 ComF family protein Machinery gene
  LPV_RS12025 (LPV_2603) - 2706533..2707606 (-) 1074 WP_014844482.1 M50 family metallopeptidase -
  LPV_RS12030 (LPV_2604) - 2707663..2707941 (-) 279 WP_010948040.1 hypothetical protein -
  LPV_RS16315 (LPV_2605) - 2707980..2708135 (+) 156 WP_162096598.1 hypothetical protein -
  LPV_RS12035 (LPV_2606) hemA 2708259..2709533 (+) 1275 WP_015444133.1 glutamyl-tRNA reductase -
  LPV_RS12040 (LPV_2607) prfA 2709517..2710605 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  LPV_RS12045 (LPV_2608) prmC 2710598..2711461 (+) 864 WP_014844485.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26744.34 Da        Isoelectric Point: 9.2792

>NTDB_id=52185 LPV_RS12020 WP_015961431.1 2705800..2706504(+) (comFC) [Legionella pneumophila subsp. pneumophila]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVDDLLTTGSTANEIAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=52185 LPV_RS12020 WP_015961431.1 2705800..2706504(+) (comFC) [Legionella pneumophila subsp. pneumophila]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGTGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCTTTTCTAAAACAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATAGCACATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

100

100

1
  comFC Legionella pneumophila strain ERS1305867

100

83.761

0.838

Multiple sequence alignment