Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JGZ11_RS10940 Genome accession   NZ_CP066710
Coordinates   2319257..2320627 (-) Length   456 a.a.
NCBI ID   WP_199273773.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DSP034     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2314257..2325627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ11_RS10915 (JGZ11_10915) cysE 2314422..2315087 (-) 666 WP_199273771.1 serine O-acetyltransferase -
  JGZ11_RS10920 (JGZ11_10920) gltX 2315475..2316929 (-) 1455 WP_037543943.1 glutamate--tRNA ligase -
  JGZ11_RS10925 (JGZ11_10925) ispF 2317006..2317485 (-) 480 WP_199273772.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JGZ11_RS10930 (JGZ11_10930) ispD 2317478..2318176 (-) 699 WP_099986823.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JGZ11_RS10935 (JGZ11_10935) - 2318177..2319238 (-) 1062 WP_014614768.1 PIN/TRAM domain-containing protein -
  JGZ11_RS10940 (JGZ11_10940) radA 2319257..2320627 (-) 1371 WP_199273773.1 DNA repair protein RadA Machinery gene
  JGZ11_RS10945 (JGZ11_10945) - 2321014..2321760 (-) 747 WP_015728605.1 ABC transporter permease -
  JGZ11_RS10950 (JGZ11_10950) - 2321747..2322451 (-) 705 WP_014614771.1 ABC transporter ATP-binding protein -
  JGZ11_RS10955 (JGZ11_10955) - 2322466..2323425 (-) 960 WP_233511255.1 hypothetical protein -
  JGZ11_RS10960 (JGZ11_10960) - 2323425..2324237 (-) 813 WP_037543946.1 SagB family peptide dehydrogenase -
  JGZ11_RS10965 (JGZ11_10965) - 2324257..2325477 (-) 1221 WP_199273774.1 YcaO-like family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49984.44 Da        Isoelectric Point: 7.0051

>NTDB_id=521848 JGZ11_RS10940 WP_199273773.1 2319257..2320627(-) (radA) [Staphylococcus pseudintermedius strain DSP034]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELASRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEALKYALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=521848 JGZ11_RS10940 WP_199273773.1 2319257..2320627(-) (radA) [Staphylococcus pseudintermedius strain DSP034]
GTGGCAAAAACAAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTACGGGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGTCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCCACATTGTT
ACTTCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTGAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCAAAACAAATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACTAAAGAAGGCCAAATCGCGGGGCCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGACCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACATTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGACGCTTACATTAAGGTGGCAGGGGGCGTCAAACTCTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGTTATATTGGCGAGGTTGGATTGACTGGTGAG
GTCCGCCGTGTTTCGCGCATTGAGCAACGTGTGCAAGAAGCAGCAAAATTGGGCTTTAAACGTGTGATTATCCCTAAAAA
CAATATTGGCGGATGGCACTTCCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.656
  radA Streptococcus pneumoniae Rx1

58.628

99.123

0.581
  radA Streptococcus pneumoniae D39

58.628

99.123

0.581
  radA Streptococcus pneumoniae R6

58.628

99.123

0.581
  radA Streptococcus pneumoniae TIGR4

58.628

99.123

0.581
  radA Streptococcus mitis NCTC 12261

58.628

99.123

0.581
  radA Streptococcus mitis SK321

58.628

99.123

0.581