Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGZ11_RS03955 Genome accession   NZ_CP066710
Coordinates   881892..882608 (-) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DSP034     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 876892..887608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ11_RS03935 (JGZ11_03935) - 877080..878165 (-) 1086 WP_199273964.1 YeeE/YedE family protein -
  JGZ11_RS03940 (JGZ11_03940) - 878397..879344 (+) 948 WP_014613408.1 LacI family DNA-binding transcriptional regulator -
  JGZ11_RS03945 (JGZ11_03945) - 879400..880884 (+) 1485 WP_100006620.1 sucrose-6-phosphate hydrolase -
  JGZ11_RS03950 (JGZ11_03950) - 880888..881832 (+) 945 WP_110148494.1 carbohydrate kinase -
  JGZ11_RS03955 (JGZ11_03955) agrA 881892..882608 (-) 717 WP_037542586.1 LytTR family DNA-binding domain-containing protein Regulator
  JGZ11_RS12125 - 882622..883416 (-) 795 WP_226957586.1 ATP-binding protein -
  JGZ11_RS03965 (JGZ11_03965) - 883937..884074 (-) 138 WP_019166405.1 cyclic lactone autoinducer peptide -
  JGZ11_RS03970 (JGZ11_03970) - 884076..884642 (-) 567 WP_096636794.1 accessory gene regulator AgrB -
  JGZ11_RS03980 (JGZ11_03980) - 885399..886202 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=521825 JGZ11_RS03955 WP_037542586.1 881892..882608(-) (agrA) [Staphylococcus pseudintermedius strain DSP034]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=521825 JGZ11_RS03955 WP_037542586.1 881892..882608(-) (agrA) [Staphylococcus pseudintermedius strain DSP034]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGTGAACGCATGGTGTCCATTATTGAAAATTATATTATGATTGA
AGAGAAACCGATGGAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCACATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836