Detailed information NTG0521773

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K4F91_RS05110
• Genome accession: NZ_CP081192
• Coordinates: 1050383..1051375 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC1722-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1045383..1056375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K4F91_RS05080 (K4F91_05080)	ispD	1045444..1046154 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K4F91_RS05085 (K4F91_05085)	ispF	1046154..1046633 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K4F91_RS05090 (K4F91_05090)	truD	1046630..1047679 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
K4F91_RS05095 (K4F91_05095)	surE	1047660..1048421 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K4F91_RS05100 (K4F91_05100)	pcm	1048415..1049041 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
K4F91_RS05105 (K4F91_05105)	nlpD	1049226..1050320 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
K4F91_RS05110 (K4F91_05110)	rpoS	1050383..1051375 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K4F91_RS05115 (K4F91_05115)	ygbN	1051469..1052833 (-)	1365	WP_000104456.1	GntP family transporter	-
K4F91_RS05120 (K4F91_05120)	ygbM	1052922..1053698 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
K4F91_RS05125 (K4F91_05125)	ygbL	1053703..1054341 (-)	639	WP_001278994.1	aldolase	-
K4F91_RS05130 (K4F91_05130)	otnK	1054338..1055600 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=521773 K4F91_RS05110 WP_000081550.1 1050383..1051375(+) (rpoS) [Escherichia coli strain EC1722-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=521773 K4F91_RS05110 WP_000081550.1 1050383..1051375(+) (rpoS) [Escherichia coli strain EC1722-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715