Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JGZ10_RS06040 Genome accession   NZ_CP066708
Coordinates   1285558..1286532 (+) Length   324 a.a.
NCBI ID   WP_014613820.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP125     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280558..1291532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ10_RS06005 (JGZ10_06005) rpmG 1280944..1281108 (+) 165 WP_256726578.1 50S ribosomal protein L33 -
  JGZ10_RS12350 - 1281260..1281505 (+) 246 WP_320205825.1 5-formyltetrahydrofolate cyclo-ligase -
  JGZ10_RS12355 - 1281505..1281798 (+) 294 WP_320205514.1 5-formyltetrahydrofolate cyclo-ligase -
  JGZ10_RS06015 (JGZ10_06015) - 1281817..1283256 (+) 1440 WP_065354201.1 rhomboid family intramembrane serine protease -
  JGZ10_RS06020 (JGZ10_06020) - 1283258..1283461 (+) 204 WP_014613816.1 YqgQ family protein -
  JGZ10_RS06025 (JGZ10_06025) - 1283458..1284444 (+) 987 WP_199274441.1 ROK family glucokinase -
  JGZ10_RS06030 (JGZ10_06030) - 1284445..1284756 (+) 312 WP_014613818.1 MTH1187 family thiamine-binding protein -
  JGZ10_RS06035 (JGZ10_06035) - 1284769..1285398 (+) 630 WP_020219625.1 MBL fold metallo-hydrolase -
  JGZ10_RS06040 (JGZ10_06040) comGA 1285558..1286532 (+) 975 WP_014613820.1 competence type IV pilus ATPase ComGA Machinery gene
  JGZ10_RS06045 (JGZ10_06045) comGB 1286501..1287568 (+) 1068 WP_199274442.1 competence type IV pilus assembly protein ComGB -
  JGZ10_RS06050 (JGZ10_06050) comGC 1287581..1287904 (+) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  JGZ10_RS06055 (JGZ10_06055) comGD 1287882..1288322 (+) 441 WP_014613823.1 competence type IV pilus minor pilin ComGD -
  JGZ10_RS06060 (JGZ10_06060) - 1288427..1288627 (+) 201 WP_020219623.1 hypothetical protein -
  JGZ10_RS06065 (JGZ10_06065) - 1288533..1289018 (+) 486 WP_080552896.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JGZ10_RS06070 (JGZ10_06070) - 1289182..1289709 (+) 528 WP_014613826.1 shikimate kinase -
  JGZ10_RS06075 (JGZ10_06075) gcvT 1289867..1290957 (+) 1091 Protein_1167 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36846.58 Da        Isoelectric Point: 7.5584

>NTDB_id=521771 JGZ10_RS06040 WP_014613820.1 1285558..1286532(+) (comGA) [Staphylococcus pseudintermedius strain HSP125]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=521771 JGZ10_RS06040 WP_014613820.1 1285558..1286532(+) (comGA) [Staphylococcus pseudintermedius strain HSP125]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCGTCAGACATTCATTTTATCCCATCACAATC
ACAAGTTGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

58.514

99.691

0.583
  comGA Staphylococcus aureus N315

58.514

99.691

0.583