Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   K3830_RS18655 Genome accession   NZ_CP081009
Coordinates   3900014..3900460 (+) Length   148 a.a.
NCBI ID   WP_000187523.1    Uniprot ID   P76362
Organism   Escherichia coli strain Stbl4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3895014..3905460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3830_RS18645 (K3830_18645) agn43 3895245..3898364 (+) 3120 WP_000820410.1 autotransporter adhesin Ag43 -
  K3830_RS18650 (K3830_18650) yeeR 3898485..3900017 (+) 1533 WP_001350525.1 protein YeeR -
  K3830_RS18655 (K3830_18655) radC 3900014..3900460 (+) 447 WP_000187523.1 RadC family protein Machinery gene
  K3830_RS18660 (K3830_18660) yeeT 3900523..3900744 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  K3830_RS18665 (K3830_18665) cbeA 3900818..3901186 (+) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  K3830_RS18670 (K3830_18670) cbtA 3901275..3901649 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  K3830_RS18675 (K3830_18675) yeeW 3901646..3901840 (+) 195 WP_000988600.1 DUF5983 family protein -
  K3830_RS18680 (K3830_18680) - 3901874..3901966 (+) 93 Protein_3696 DUF957 domain-containing protein -
  K3830_RS18685 (K3830_18685) - 3902255..3902383 (-) 129 Protein_3697 transposase domain-containing protein -
  K3830_RS18690 (K3830_18690) - 3902455..3902637 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K3830_RS18695 (K3830_18695) tmaR 3902738..3903067 (-) 330 WP_000450409.1 DUF496 family protein -
  K3830_RS18700 (K3830_18700) yeeA 3903239..3904297 (-) 1059 WP_001200891.1 FUSC family protein -
  K3830_RS18705 (K3830_18705) sbmC 3904495..3904968 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=521657 K3830_RS18655 WP_000187523.1 3900014..3900460(+) (radC) [Escherichia coli strain Stbl4]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=521657 K3830_RS18655 WP_000187523.1 3900014..3900460(+) (radC) [Escherichia coli strain Stbl4]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419