Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JGZ06_RS10685 Genome accession   NZ_CP066702
Coordinates   2264840..2266210 (-) Length   456 a.a.
NCBI ID   WP_199273480.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP138     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2259840..2271210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ06_RS10660 (JGZ06_10660) cysE 2260005..2260670 (-) 666 WP_172425792.1 serine O-acetyltransferase -
  JGZ06_RS10665 (JGZ06_10665) gltX 2261058..2262512 (-) 1455 WP_037543943.1 glutamate--tRNA ligase -
  JGZ06_RS10670 (JGZ06_10670) ispF 2262589..2263068 (-) 480 WP_014614766.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JGZ06_RS10675 (JGZ06_10675) ispD 2263061..2263759 (-) 699 WP_014614767.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JGZ06_RS10680 (JGZ06_10680) - 2263760..2264821 (-) 1062 WP_014614768.1 PIN/TRAM domain-containing protein -
  JGZ06_RS10685 (JGZ06_10685) radA 2264840..2266210 (-) 1371 WP_199273480.1 DNA repair protein RadA Machinery gene
  JGZ06_RS10690 (JGZ06_10690) - 2266597..2267343 (-) 747 WP_015728605.1 ABC transporter permease -
  JGZ06_RS10695 (JGZ06_10695) - 2267330..2268034 (-) 705 WP_014614771.1 ABC transporter ATP-binding protein -
  JGZ06_RS10700 (JGZ06_10700) - 2268049..2269008 (-) 960 WP_232354906.1 hypothetical protein -
  JGZ06_RS10705 (JGZ06_10705) - 2269008..2269820 (-) 813 WP_187531861.1 SagB family peptide dehydrogenase -
  JGZ06_RS10710 (JGZ06_10710) - 2269840..2271060 (-) 1221 WP_014614774.1 YcaO-like family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50026.54 Da        Isoelectric Point: 7.0051

>NTDB_id=521653 JGZ06_RS10685 WP_199273480.1 2264840..2266210(-) (radA) [Staphylococcus pseudintermedius strain HSP138]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWHFPEGIEVIGMTSVNEALKYALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=521653 JGZ06_RS10685 WP_199273480.1 2264840..2266210(-) (radA) [Staphylococcus pseudintermedius strain HSP138]
GTGGCAAAAACAAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTACGGGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCCACATTGTT
ACTTCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTCAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCTAAACAAATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATCGCGGGGCCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGACCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACGTTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGACGCTTACATTAAGGTGGCTGGGGGCGTCAAACTCTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGTTATATTGGCGAGGTTGGATTGACTGGTGAG
GTCCGCCGTGTTTCGCGCATTGAGCAACGTGTGCAAGAAGCAGCAAAATTGGGCTTTAAACGTGTGATTATCCCTAAAAA
CAATATTGGCGGATGGCACTTCCCAGAAGGTATTGAAGTGATTGGCATGACTTCTGTCAATGAAGCATTGAAATACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.656
  radA Streptococcus pneumoniae Rx1

58.407

99.123

0.579
  radA Streptococcus pneumoniae D39

58.407

99.123

0.579
  radA Streptococcus pneumoniae R6

58.407

99.123

0.579
  radA Streptococcus pneumoniae TIGR4

58.407

99.123

0.579
  radA Streptococcus mitis NCTC 12261

58.407

99.123

0.579
  radA Streptococcus mitis SK321

58.407

99.123

0.579