Detailed information NTG0521607

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K3830_RS05475
• Genome accession: NZ_CP081009
• Coordinates: 1157924..1158916 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081586.1
• Uniprot ID: Q540P1
• Organism: Escherichia coli strain Stbl4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1152924..1163916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K3830_RS05455 (K3830_05455)	otnK	1153700..1154866 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
K3830_RS05460 (K3830_05460)	ygbL	1154958..1155596 (+)	639	WP_001278994.1	aldolase	-
K3830_RS05465 (K3830_05465)	ygbM	1155601..1156377 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
K3830_RS05470 (K3830_05470)	ygbN	1156466..1157830 (+)	1365	WP_000104441.1	GntP family transporter	-
K3830_RS05475 (K3830_05475)	rpoS	1157924..1158916 (-)	993	WP_000081586.1	RNA polymerase sigma factor RpoS	Regulator
K3830_RS05480 (K3830_05480)	nlpD	1158979..1160073 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
K3830_RS05485 (K3830_05485)	pcm	1160258..1160884 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
K3830_RS05490 (K3830_05490)	surE	1160878..1161639 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K3830_RS05495 (K3830_05495)	truD	1161620..1162669 (-)	1050	WP_000568970.1	tRNA pseudouridine(13) synthase TruD	-
K3830_RS05500 (K3830_05500)	ispF	1162666..1163145 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K3830_RS05505 (K3830_05505)	ispD	1163145..1163855 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.89 Da
• Isoelectric Point: 4.5886

>NTDB_id=521607 K3830_RS05475 WP_000081586.1 1157924..1158916(-) (rpoS) [Escherichia coli strain Stbl4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=521607 K3830_RS05475 WP_000081586.1 1157924..1158916(-) (rpoS) [Escherichia coli strain Stbl4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q540P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715