Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | LPV_RS03425 | Genome accession | NC_018140 |
| Coordinates | 720957..721664 (-) | Length | 235 a.a. |
| NCBI ID | WP_014843471.1 | Uniprot ID | - |
| Organism | Legionella pneumophila subsp. pneumophila | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 715957..726664
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPV_RS03410 (LPV_0742) | - | 718833..719345 (-) | 513 | WP_014843468.1 | pilus assembly protein | - |
| LPV_RS03415 (LPV_0743) | - | 719342..720409 (-) | 1068 | WP_014843469.1 | PilW family protein | - |
| LPV_RS03420 (LPV_0744) | pilV | 720406..720945 (-) | 540 | WP_014843470.1 | type IV pilus modification protein PilV | - |
| LPV_RS03425 (LPV_0745) | fimT | 720957..721664 (-) | 708 | WP_014843471.1 | GspH/FimT family pseudopilin | Machinery gene |
| LPV_RS03430 (LPV_0746) | - | 721884..722744 (-) | 861 | WP_027224587.1 | polysaccharide deacetylase family protein | - |
| LPV_RS03435 (LPV_0747) | - | 722921..724270 (-) | 1350 | WP_080031323.1 | lpg0634 family Dot/Icm T4SS effector | - |
| LPV_RS03440 (LPV_0750) | - | 724558..726039 (+) | 1482 | WP_014843474.1 | ArnT family glycosyltransferase | - |
Sequence
Protein
Download Length: 235 a.a. Molecular weight: 24934.66 Da Isoelectric Point: 8.2443
>NTDB_id=52158 LPV_RS03425 WP_014843471.1 720957..721664(-) (fimT) [Legionella pneumophila subsp. pneumophila]
MNKVITESQKLTLRNLANMLFCVESSVLPTKSNIAQKIQTKGIMYNNLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGTNWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGSTPGQAVWNNGALNCP
MNKVITESQKLTLRNLANMLFCVESSVLPTKSNIAQKIQTKGIMYNNLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGTNWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGSTPGQAVWNNGALNCP
Nucleotide
Download Length: 708 bp
>NTDB_id=52158 LPV_RS03425 WP_014843471.1 720957..721664(-) (fimT) [Legionella pneumophila subsp. pneumophila]
TTGAACAAAGTGATAACGGAATCACAAAAGCTCACTCTACGCAACTTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCTACTAAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATAATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCTATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAACCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACCTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACCG
GATTTGTCCAATCCGGATCAACACCCGGCCAAGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA
TTGAACAAAGTGATAACGGAATCACAAAAGCTCACTCTACGCAACTTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCTACTAAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATAATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCTATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAACCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACCTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACCG
GATTTGTCCAATCCGGATCAACACCCGGCCAAGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Legionella pneumophila strain Lp02 |
95.745 |
100 |
0.957 |