Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K3831_RS18245 Genome accession   NZ_CP081008
Coordinates   3789949..3791376 (+) Length   475 a.a.
NCBI ID   WP_077775097.1    Uniprot ID   -
Organism   Escherichia coli strain XL10-gold-ultracompetent     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3784949..3796376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3831_RS18205 (K3831_18205) yeeW 3785133..3785327 (+) 195 WP_000988600.1 DUF5983 family protein -
  K3831_RS18210 (K3831_18210) - 3785361..3785453 (+) 93 Protein_3615 DUF957 domain-containing protein -
  K3831_RS18215 (K3831_18215) - 3785742..3785870 (-) 129 Protein_3616 transposase domain-containing protein -
  K3831_RS18220 (K3831_18220) - 3785942..3786124 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K3831_RS18225 (K3831_18225) tmaR 3786225..3786554 (-) 330 WP_000450409.1 DUF496 family protein -
  K3831_RS18230 (K3831_18230) yeeA 3786726..3787784 (-) 1059 WP_046613327.1 FUSC family protein -
  K3831_RS18235 (K3831_18235) sbmC 3787982..3788455 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  K3831_RS18240 (K3831_18240) dacD 3788574..3789740 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K3831_RS18245 (K3831_18245) sbcB 3789949..3791376 (+) 1428 WP_077775097.1 exodeoxyribonuclease I Machinery gene
  K3831_RS18250 (K3831_18250) tsuB 3791419..3791646 (-) 228 WP_046613325.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K3831_RS18255 (K3831_18255) tsuA 3791660..3792718 (-) 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
  K3831_RS18260 (K3831_18260) plaP 3792897..3794255 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K3831_RS18265 (K3831_18265) yoeI 3794245..3794307 (-) 63 WP_010723108.1 membrane protein YoeI -
  K3831_RS18270 (K3831_18270) yeeY 3794522..3795451 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K3831_RS18275 (K3831_18275) yeeZ 3795497..3796321 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54490.78 Da        Isoelectric Point: 5.4700

>NTDB_id=521578 K3831_RS18245 WP_077775097.1 3789949..3791376(+) (sbcB) [Escherichia coli strain XL10-gold-ultracompetent]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLSALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=521578 K3831_RS18245 WP_077775097.1 3789949..3791376(+) (sbcB) [Escherichia coli strain XL10-gold-ultracompetent]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTATCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585