Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   LPO_RS09860 Genome accession   NC_018139
Coordinates   2171214..2171528 (-) Length   104 a.a.
NCBI ID   WP_014842047.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166214..2176528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPO_RS09835 (LPO_2089) - 2166639..2167139 (-) 501 WP_014842042.1 hypothetical protein -
  LPO_RS09840 (LPO_2090) - 2167631..2168491 (+) 861 WP_014842043.1 polysaccharide deacetylase family protein -
  LPO_RS09845 (LPO_2091) - 2168609..2169805 (-) 1197 WP_014842044.1 murein transglycosylase A -
  LPO_RS09850 (LPO_2092) lpp1976 2169915..2170472 (-) 558 WP_014842045.1 hypothetical protein Machinery gene
  LPO_RS09855 (LPO_2094) lpp1977 2170469..2171275 (-) 807 WP_051009151.1 PilW family protein Machinery gene
  LPO_RS09860 (LPO_2095) lpp1978 2171214..2171528 (-) 315 WP_014842047.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LPO_RS09865 (LPO_2096) hisC 2171688..2172797 (+) 1110 WP_014842048.1 histidinol-phosphate transaminase -
  LPO_RS09870 (LPO_2097) - 2172834..2173175 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LPO_RS09875 (LPO_2098) secF 2173367..2174284 (-) 918 WP_014842049.1 protein translocase subunit SecF -
  LPO_RS09880 (LPO_2099) secD 2174297..2176153 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  LPO_RS09885 (LPO_2100) yajC 2176175..2176510 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12293.40 Da        Isoelectric Point: 9.8344

>NTDB_id=52141 LPO_RS09860 WP_014842047.1 2171214..2171528(-) (lpp1978) [Legionella pneumophila subsp. pneumophila]
MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYTLDAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=52141 LPO_RS09860 WP_014842047.1 2171214..2171528(-) (lpp1978) [Legionella pneumophila subsp. pneumophila]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGCTCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGTTCCTATACTCTGGATGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

97.115

100

0.971
  lpp1978 Legionella pneumophila str. Paris

95.192

100

0.952

Multiple sequence alignment