Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   K3G18_RS12730 Genome accession   NZ_CP080629
Coordinates   2487748..2488875 (+) Length   375 a.a.
NCBI ID   WP_220562262.1    Uniprot ID   -
Organism   Bacillus subtilis strain YPS-32     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2482748..2493875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS21190 - 2483326..2483504 (-) 179 Protein_2464 hypothetical protein -
  K3G18_RS12705 (K3G18_12705) arsC 2483859..2484278 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  K3G18_RS12710 (K3G18_12710) acr3 2484290..2485330 (-) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  K3G18_RS12715 (K3G18_12715) arsK 2485353..2485793 (-) 441 WP_032722151.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  K3G18_RS12720 (K3G18_12720) arsR 2485852..2486169 (-) 318 WP_029318103.1 arsenical resistance operon transcriptional regulator ArsR -
  K3G18_RS12725 (K3G18_12725) yqcI 2486541..2487305 (-) 765 WP_017696291.1 YqcI/YcgG family protein -
  K3G18_RS12730 (K3G18_12730) rapC 2487748..2488875 (+) 1128 WP_220562262.1 response regulator aspartate phosphatase RapE Regulator
  K3G18_RS12735 (K3G18_12735) phrE 2488865..2488999 (+) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  K3G18_RS12740 (K3G18_12740) - 2489109..2489267 (+) 159 WP_003245945.1 hypothetical protein -
  K3G18_RS12745 (K3G18_12745) yqcG 2489637..2491232 (+) 1596 WP_004399034.1 LXG family T7SS effector endonuclease toxin YqcG -
  K3G18_RS12750 (K3G18_12750) yqcF 2491247..2491825 (+) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  K3G18_RS12755 (K3G18_12755) - 2491943..2492089 (+) 147 WP_009967791.1 hypothetical protein -
  K3G18_RS12760 (K3G18_12760) - 2492086..2492448 (-) 363 WP_003229947.1 hypothetical protein -
  K3G18_RS12765 (K3G18_12765) - 2492464..2492943 (-) 480 WP_004399085.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44654.42 Da        Isoelectric Point: 7.3392

>NTDB_id=521287 K3G18_RS12730 WP_220562262.1 2487748..2488875(+) (rapC) [Bacillus subtilis strain YPS-32]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEEMALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=521287 K3G18_RS12730 WP_220562262.1 2487748..2488875(+) (rapC) [Bacillus subtilis strain YPS-32]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGATGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_12)

(184-246)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.633

100

0.411
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384