Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K3G18_RS12690 Genome accession   NZ_CP080629
Coordinates   2480924..2481334 (-) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   P42983
Organism   Bacillus subtilis strain YPS-32     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2475924..2486334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS12660 (K3G18_12660) - 2476036..2476176 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  K3G18_RS12665 (K3G18_12665) yqeF 2476482..2477213 (-) 732 WP_032722145.1 SGNH/GDSL hydrolase family protein -
  K3G18_RS12670 (K3G18_12670) cwlH 2477465..2478217 (-) 753 WP_032722147.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  K3G18_RS12675 (K3G18_12675) yqeD 2478404..2479030 (+) 627 WP_015714297.1 TVP38/TMEM64 family protein -
  K3G18_RS12680 (K3G18_12680) gnd 2479049..2479917 (-) 869 Protein_2459 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  K3G18_RS12685 (K3G18_12685) yqeB 2480169..2480891 (+) 723 WP_010886572.1 hypothetical protein -
  K3G18_RS12690 (K3G18_12690) nucA/comI 2480924..2481334 (-) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  K3G18_RS12695 (K3G18_12695) - 2481530..2481880 (+) 351 Protein_2462 sigma-70 family RNA polymerase sigma factor -
  K3G18_RS12700 (K3G18_12700) spoIVCA 2481908..2483368 (-) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  K3G18_RS21190 - 2483326..2483504 (-) 179 Protein_2464 hypothetical protein -
  K3G18_RS12705 (K3G18_12705) arsC 2483859..2484278 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  K3G18_RS12710 (K3G18_12710) acr3 2484290..2485330 (-) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  K3G18_RS12715 (K3G18_12715) arsK 2485353..2485793 (-) 441 WP_032722151.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  K3G18_RS12720 (K3G18_12720) arsR 2485852..2486169 (-) 318 WP_029318103.1 arsenical resistance operon transcriptional regulator ArsR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=521286 K3G18_RS12690 WP_009967785.1 2480924..2481334(-) (nucA/comI) [Bacillus subtilis strain YPS-32]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=521286 K3G18_RS12690 WP_009967785.1 2480924..2481334(-) (nucA/comI) [Bacillus subtilis strain YPS-32]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAGCAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCTGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42983

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529