Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   K3G18_RS04125 Genome accession   NZ_CP080629
Coordinates   815785..816501 (+) Length   238 a.a.
NCBI ID   WP_032723001.1    Uniprot ID   -
Organism   Bacillus subtilis strain YPS-32     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 810785..821501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS04110 (K3G18_04110) yfkQ 810862..812403 (-) 1542 Protein_762 spore germination protein -
  K3G18_RS04115 (K3G18_04115) treP 812596..814008 (+) 1413 WP_032722999.1 PTS system trehalose-specific EIIBC component -
  K3G18_RS04120 (K3G18_04120) treC 814079..815764 (+) 1686 WP_032723000.1 alpha,alpha-phosphotrehalase -
  K3G18_RS04125 (K3G18_04125) treR 815785..816501 (+) 717 WP_032723001.1 trehalose operon repressor Regulator
  K3G18_RS04130 (K3G18_04130) hypO 816641..817306 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27859.85 Da        Isoelectric Point: 7.1736

>NTDB_id=521212 K3G18_RS04125 WP_032723001.1 815785..816501(+) (treR) [Bacillus subtilis strain YPS-32]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDMWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=521212 K3G18_RS04125 WP_032723001.1 815785..816501(+) (treR) [Bacillus subtilis strain YPS-32]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATGTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTATTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGGTTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416