Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   K3G18_RS03640 Genome accession   NZ_CP080629
Coordinates   713182..714312 (+) Length   376 a.a.
NCBI ID   WP_032722985.1    Uniprot ID   -
Organism   Bacillus subtilis strain YPS-32     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 708182..719312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS03625 (K3G18_03625) - 710014..711022 (+) 1009 Protein_664 hypothetical protein -
  K3G18_RS03630 (K3G18_03630) - 711234..711671 (+) 438 WP_015252628.1 hypothetical protein -
  K3G18_RS03635 (K3G18_03635) - 711876..713036 (+) 1161 WP_032722984.1 lysozyme inhibitor LprI family protein -
  K3G18_RS03640 (K3G18_03640) rapC 713182..714312 (+) 1131 WP_032722985.1 response regulator aspartate phosphatase RapH Regulator
  K3G18_RS03645 (K3G18_03645) phrH 714302..714475 (+) 174 WP_032722986.1 phosphatase RapH inhibitor PhrH -
  K3G18_RS03650 (K3G18_03650) yeeI 714635..715354 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K3G18_RS03655 (K3G18_03655) yeeK 715488..715934 (+) 447 WP_015715466.1 spore coat protein YeeK -
  K3G18_RS03660 (K3G18_03660) yezE 716049..716633 (+) 585 WP_032722987.1 TetR/AcrR family transcriptional regulator -
  K3G18_RS03665 (K3G18_03665) yesE 716712..717158 (+) 447 WP_032722988.1 nuclear transport factor 2 family protein -
  K3G18_RS03670 (K3G18_03670) yesF 717155..718020 (+) 866 Protein_673 NAD-dependent epimerase/dehydratase family protein -
  K3G18_RS03675 (K3G18_03675) cotJA 718146..718394 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  K3G18_RS03680 (K3G18_03680) cotJB 718378..718641 (+) 264 WP_003219491.1 spore coat protein CotJB -
  K3G18_RS03685 (K3G18_03685) cotJC 718656..719225 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44027.49 Da        Isoelectric Point: 6.1531

>NTDB_id=521211 K3G18_RS03640 WP_032722985.1 713182..714312(+) (rapC) [Bacillus subtilis strain YPS-32]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVKQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLCWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=521211 K3G18_RS03640 WP_032722985.1 713182..714312(+) (rapC) [Bacillus subtilis strain YPS-32]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGAAGCAGGACATTCAGCAAATGGAAGAAGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTATGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTACTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTTTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402