Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LPO_RS04755 Genome accession   NC_018139
Coordinates   1032936..1033484 (+) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1027936..1038484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPO_RS04745 (LPO_1010) ravI 1030444..1031451 (-) 1008 WP_014841275.1 Dot/Icm T4SS effector RavI -
  LPO_RS04750 (LPO_1011) pilM 1031868..1032932 (+) 1065 WP_014841276.1 type IV pilus assembly protein PilM Machinery gene
  LPO_RS04755 (LPO_1012) pilN 1032936..1033484 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  LPO_RS04760 (LPO_1013) pilO 1033498..1034097 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  LPO_RS04765 (LPO_1014) pilP 1034094..1034678 (+) 585 WP_014841278.1 pilus assembly protein PilP Machinery gene
  LPO_RS04770 (LPO_1015) pilQ 1034682..1036778 (+) 2097 WP_014841279.1 type IV pilus secretin PilQ Machinery gene
  LPO_RS04775 (LPO_1016) aroK 1037224..1037751 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=52121 LPO_RS04755 WP_010946663.1 1032936..1033484(+) (pilN) [Legionella pneumophila subsp. pneumophila]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=52121 LPO_RS04755 WP_010946663.1 1032936..1033484(+) (pilN) [Legionella pneumophila subsp. pneumophila]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGGATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTCTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTGGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment