Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   K3G18_RS02415 Genome accession   NZ_CP080629
Coordinates   475593..476027 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain YPS-32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470593..481027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS02385 (K3G18_02385) ydaD 471240..472100 (+) 861 WP_032722917.1 SDR family oxidoreductase -
  K3G18_RS02390 (K3G18_02390) lyxE 472116..472619 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  K3G18_RS02395 (K3G18_02395) ydaF 472707..473258 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  K3G18_RS02400 (K3G18_02400) ydaG 473336..473758 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  K3G18_RS02405 (K3G18_02405) amj 474264..475073 (+) 810 WP_032722918.1 lipid II flippase Amj -
  K3G18_RS02410 (K3G18_02410) ydzA 475118..475408 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  K3G18_RS02415 (K3G18_02415) lrpC 475593..476027 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  K3G18_RS02420 (K3G18_02420) topB 476092..478275 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  K3G18_RS02425 (K3G18_02425) ephJ 478478..479566 (+) 1089 WP_003246551.1 lipoprotein -
  K3G18_RS02430 (K3G18_02430) epsK 479547..480398 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=521208 K3G18_RS02415 WP_003246585.1 475593..476027(+) (lrpC) [Bacillus subtilis strain YPS-32]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=521208 K3G18_RS02415 WP_003246585.1 475593..476027(+) (lrpC) [Bacillus subtilis strain YPS-32]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1