Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   K3G18_RS00330 Genome accession   NZ_CP080629
Coordinates   59727..59957 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain YPS-32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54727..64957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS00300 (K3G18_00300) ridA 54891..55268 (+) 378 WP_015715103.1 2-iminobutanoate/2-iminopropanoate deaminase -
  K3G18_RS00305 (K3G18_00305) spoVG 55463..55756 (+) 294 WP_003218346.1 septation regulator SpoVG -
  K3G18_RS00310 (K3G18_00310) glmU 55949..57319 (+) 1371 WP_220562326.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  K3G18_RS00315 (K3G18_00315) prsS 57342..58295 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  K3G18_RS00320 (K3G18_00320) rplYB 58380..58994 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  K3G18_RS00325 (K3G18_00325) pth 59101..59667 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  K3G18_RS00330 (K3G18_00330) subA/fin 59727..59957 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  K3G18_RS00335 (K3G18_00335) mfd 60027..63560 (+) 3534 WP_032723084.1 transcription-repair coupling factor -
  K3G18_RS00340 (K3G18_00340) spoVT 63696..64232 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=521191 K3G18_RS00330 WP_003243417.1 59727..59957(+) (subA/fin) [Bacillus subtilis strain YPS-32]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=521191 K3G18_RS00330 WP_003243417.1 59727..59957(+) (subA/fin) [Bacillus subtilis strain YPS-32]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1