Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPO_RS01900 Genome accession   NC_018139
Coordinates   419798..420277 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila subsp. pneumophila     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 414798..425277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPO_RS01865 (LPO_0398) rplO 414930..415364 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  LPO_RS01870 (LPO_0399) secY 415367..416695 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  LPO_RS16675 (LPO_CDS416712D) rpmJ 416712..416825 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  LPO_RS01875 (LPO_0400) rpsM 416903..417259 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  LPO_RS01880 (LPO_0402) rpsK 417283..417681 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  LPO_RS01885 (LPO_0403) rpsD 417698..418318 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  LPO_RS01890 (LPO_0404) - 418337..419329 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  LPO_RS01895 (LPO_0405) rplQ 419348..419731 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  LPO_RS01900 (LPO_0406) ssb 419798..420277 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  LPO_RS01905 (LPO_0407) - 420364..421728 (-) 1365 WP_014840960.1 MFS transporter -
  LPO_RS01910 (LPO_0408) fabL 421890..422648 (+) 759 WP_014840961.1 enoyl-[acyl-carrier-protein] reductase FabL -
  LPO_RS01915 (LPO_0409) - 422719..423132 (+) 414 WP_010946108.1 acyl carrier protein -
  LPO_RS01920 (LPO_0410) - 423132..424028 (+) 897 WP_014840962.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=52114 LPO_RS01900 WP_011213016.1 419798..420277(-) (ssb) [Legionella pneumophila subsp. pneumophila]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=52114 LPO_RS01900 WP_011213016.1 419798..420277(-) (ssb) [Legionella pneumophila subsp. pneumophila]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAAGCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGATATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment