Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JFL60_RS06500 Genome accession   NZ_CP066567
Coordinates   1337148..1337612 (+) Length   154 a.a.
NCBI ID   WP_132995413.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-079     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1332148..1342612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL60_RS06490 (JFL60_06490) - 1332911..1333966 (-) 1056 WP_011609282.1 rod shape-determining protein -
  JFL60_RS06495 (JFL60_06495) uvrA 1334138..1336969 (-) 2832 WP_132995415.1 excinuclease ABC subunit UvrA -
  JFL60_RS06500 (JFL60_06500) ssb 1337148..1337612 (+) 465 WP_132995413.1 single-stranded DNA-binding protein Machinery gene
  JFL60_RS06505 (JFL60_06505) metF 1337698..1338582 (-) 885 WP_133098730.1 methylenetetrahydrofolate reductase -
  JFL60_RS06510 (JFL60_06510) - 1338793..1339311 (-) 519 WP_012340237.1 ClbS/DfsB family four-helix bundle protein -
  JFL60_RS06515 (JFL60_06515) nagZ 1339340..1340386 (-) 1047 WP_012340236.1 beta-N-acetylhexosaminidase -
  JFL60_RS06520 (JFL60_06520) - 1340393..1340749 (-) 357 WP_012340235.1 YcfL family protein -
  JFL60_RS06525 (JFL60_06525) hinT 1340749..1341099 (-) 351 WP_012340234.1 purine nucleoside phosphoramidase -
  JFL60_RS06530 (JFL60_06530) focA 1341343..1342194 (+) 852 WP_075293712.1 formate transporter FocA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17447.39 Da        Isoelectric Point: 6.4838

>NTDB_id=521038 JFL60_RS06500 WP_132995413.1 1337148..1337612(+) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-079]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSRPKPSIASPSPVDAPLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=521038 JFL60_RS06500 WP_132995413.1 1337148..1337612(+) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-079]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAAGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCGAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.74
  ssb Vibrio cholerae strain A1552

51.685

100

0.597
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.5
  ssb Neisseria meningitidis MC58

43.931

100

0.494