Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   JFL60_RS04335 Genome accession   NZ_CP066567
Coordinates   841955..844381 (+) Length   808 a.a.
NCBI ID   WP_132994878.1    Uniprot ID   A0AAX2S2U0
Organism   Histophilus somni strain ASc-MMNZ-VFA-079     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 836955..849381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL60_RS04310 (JFL60_04310) nagB 837006..837812 (+) 807 WP_012340645.1 glucosamine-6-phosphate deaminase -
  JFL60_RS04315 (JFL60_04315) nagA 837825..838973 (+) 1149 WP_132994874.1 N-acetylglucosamine-6-phosphate deacetylase -
  JFL60_RS04320 (JFL60_04320) folK 839071..839547 (-) 477 WP_012340643.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  JFL60_RS04325 (JFL60_04325) pcnB 839544..840917 (-) 1374 WP_132994876.1 polynucleotide adenylyltransferase PcnB -
  JFL60_RS04330 (JFL60_04330) dksA 841219..841656 (-) 438 WP_012340641.1 RNA polymerase-binding protein DksA -
  JFL60_RS04335 (JFL60_04335) rec2 841955..844381 (+) 2427 WP_132994878.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JFL60_RS04340 (JFL60_04340) msbA 844433..846181 (+) 1749 WP_041605303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  JFL60_RS04345 (JFL60_04345) rlmKL 846228..848384 (+) 2157 WP_132994880.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 92495.99 Da        Isoelectric Point: 9.5833

>NTDB_id=521035 JFL60_RS04335 WP_132994878.1 841955..844381(+) (rec2) [Histophilus somni strain ASc-MMNZ-VFA-079]
MKFNLDHYLFVILVSAMTLLITPRIFLLNWQWILILCLVLGLGYIGVKAVFFRCVLKLFFIFVLGLGFFHYQALNLLEQS
EHITRLPKKVQTNVKIAEIIQQKDYQAVIAEGKFTSSLPTQRIYLNWRTEQEVQVGEIWQVNMHIRPISSRLNIGGFDRQ
TWYLAKEITAYATVKSAVKIGEDFSWRATRLNQALQQTSYLVSQGLLLALGFGERAWLDKELWQLYQQTNTAHLIAISGL
HIGLAMFIGFTLGRAIQLLFPTRYIEPYFPLILGLFLAFCYAELAGFSIPTFRAIVALFIVCLCRICRVSYNVWQLFLRV
ICVLLILNPFMLLSASFWLSIGAVGCLIMWYQWIPLNLFLWKEKPLAQSSLKKVRYFIGLFHLQFGLLWFFTPIQLLIFN
GIALNGFWANLLLLPLFSFLLVPLILFAVLTEGALNSWNIADQLAIWINQLLKLLPNQWINISLAESYFISAILALLFTL
CCKWIIKCSTDDDLSLLRKVRKKSFYPIRLNFSDGFSHKKYQYGMVVSSAMFVIFLCLWFFSLYEQGRLKNTQWQFDTLD
VGQGLASLLVKNQHGILYDTGASWKNGSMAKIEIIPYLRRQGIILDKVILSHDDNDHAGGVKDIFQAYPNAEFISPSLKK
YENSPENRPHITCQKGKIWHWQGLYIEALSPSKIVMRANNPDSCVLIISDGQHKVLLTGDADVATEYKILSDLGKIDVLQ
VGHHGSKTSTGEKLLQHIQPKIALISSGRWNPWGFPHQDVVKRLNAVESAVYNTAISGQIRLIFKGKDIQIQTARTEFSP
WYRGLIGL

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=521035 JFL60_RS04335 WP_132994878.1 841955..844381(+) (rec2) [Histophilus somni strain ASc-MMNZ-VFA-079]
ATGAAATTCAACCTTGATCATTACCTTTTTGTTATTTTAGTGAGTGCAATGACATTGCTAATTACGCCTCGTATTTTTTT
ATTGAATTGGCAATGGATATTGATCTTATGTCTTGTTCTTGGGTTAGGATATATTGGTGTTAAAGCAGTATTTTTTCGCT
GTGTTCTAAAGCTATTTTTCATTTTTGTTCTTGGGTTGGGATTTTTTCATTATCAAGCATTAAACTTGTTGGAACAAAGT
GAGCATATTACCCGCTTACCTAAAAAAGTACAAACTAACGTTAAAATAGCCGAAATTATTCAGCAGAAAGACTATCAAGC
AGTGATCGCAGAAGGAAAATTCACCTCATCTTTGCCAACACAGCGAATTTATTTAAATTGGCGTACTGAGCAAGAGGTTC
AAGTTGGTGAAATTTGGCAAGTAAATATGCACATTCGTCCGATTTCTTCTCGATTAAATATAGGAGGATTTGATCGTCAA
ACCTGGTATTTAGCAAAAGAAATTACAGCTTATGCCACAGTAAAAAGTGCGGTGAAAATTGGTGAGGATTTTTCTTGGCG
AGCTACTCGACTGAATCAAGCTTTACAACAAACTTCCTATTTAGTTTCACAAGGTTTATTGCTTGCATTGGGTTTTGGTG
AAAGAGCATGGTTAGACAAGGAATTATGGCAACTTTATCAACAAACCAATACCGCACATTTAATTGCAATTTCAGGGTTG
CATATTGGTTTAGCTATGTTCATCGGTTTTACATTAGGGCGAGCTATTCAATTATTATTCCCTACTCGTTATATTGAACC
TTATTTTCCTTTAATATTAGGGCTTTTTTTAGCATTCTGTTATGCAGAATTAGCGGGATTTTCAATTCCTACTTTTCGTG
CGATTGTCGCTTTATTTATAGTTTGTTTGTGTCGCATATGTCGAGTTTCCTATAATGTTTGGCAACTATTTTTGCGGGTT
ATTTGTGTTTTACTGATACTTAATCCATTTATGTTATTGTCAGCCAGTTTTTGGCTATCAATCGGAGCGGTAGGCTGTTT
GATCATGTGGTATCAATGGATACCGCTAAATTTATTTTTATGGAAAGAAAAGCCTTTGGCACAATCTTCCTTGAAAAAAG
TGCGGTATTTTATCGGTCTTTTTCATTTGCAATTTGGGCTTTTGTGGTTTTTTACACCTATCCAACTCTTAATTTTTAAC
GGTATCGCCTTAAATGGATTTTGGGCTAATTTATTATTGTTGCCTTTGTTCAGTTTTTTGTTAGTTCCACTTATTCTTTT
TGCTGTACTGACGGAAGGTGCGTTAAATAGCTGGAATATAGCTGATCAGCTTGCTATATGGATCAATCAATTGTTAAAGC
TGTTACCAAATCAGTGGATCAATATTTCTCTTGCAGAAAGCTATTTTATTTCAGCTATATTAGCTTTGCTCTTCACCTTA
TGCTGTAAATGGATTATTAAGTGTTCAACCGACGATGATTTATCTTTATTGAGAAAAGTTAGAAAAAAAAGTTTTTACCC
TATACGGTTGAATTTTTCGGACGGTTTTTCACATAAAAAATATCAATATGGTATGGTGGTCAGTTCAGCTATGTTTGTTA
TTTTTTTATGTCTGTGGTTTTTTTCGCTATATGAACAAGGGCGATTAAAAAACACACAATGGCAATTTGATACTCTAGAT
GTTGGTCAAGGATTGGCAAGTTTATTGGTAAAAAATCAACATGGAATTTTGTATGATACGGGAGCAAGCTGGAAAAATGG
TAGTATGGCAAAAATTGAGATTATTCCTTATCTAAGAAGACAGGGTATTATTCTTGATAAAGTTATATTAAGTCATGATG
ATAATGATCATGCAGGTGGAGTAAAAGATATTTTCCAAGCTTATCCGAATGCTGAGTTTATCAGTCCCTCATTAAAAAAG
TACGAGAATTCTCCAGAAAATAGACCTCATATTACTTGTCAAAAAGGAAAAATATGGCATTGGCAAGGGTTATATATTGA
AGCCTTATCGCCAAGTAAAATTGTGATGAGAGCCAATAATCCGGATTCTTGTGTGCTGATAATTTCAGATGGACAGCATA
AAGTACTATTAACGGGAGATGCTGATGTGGCGACTGAATATAAAATTTTGTCTGACTTGGGTAAGATTGATGTGTTACAG
GTCGGACATCATGGTAGTAAAACGTCAACCGGTGAGAAATTACTACAGCATATTCAGCCTAAAATTGCTTTAATTTCCAG
TGGACGTTGGAATCCTTGGGGATTTCCGCATCAAGATGTCGTCAAACGCTTAAATGCGGTTGAAAGTGCGGTCTATAATA
CGGCCATTTCCGGTCAAATTCGTTTAATATTCAAAGGAAAAGATATTCAAATTCAAACCGCAAGGACAGAGTTTAGCCCT
TGGTATAGAGGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(210-484)

Metallo-beta-lactamase superfamily (Lactamase_B)

(560-747)

Domain of unknown function (DUF4131) (DUF4131)

(30-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.361

100

0.514