Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JMO07_RS06835 Genome accession   NZ_CP080564
Coordinates   1459409..1460035 (+) Length   208 a.a.
NCBI ID   WP_001108889.1    Uniprot ID   Q7B2U9
Organism   Staphylococcus aureus strain HL16278     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1454409..1465035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO07_RS06805 (JMO07_001364) - 1455394..1455726 (-) 333 WP_000516795.1 DUF4889 domain-containing protein -
  JMO07_RS06810 (JMO07_001365) - 1455810..1456955 (-) 1146 WP_000487147.1 class I SAM-dependent RNA methyltransferase -
  JMO07_RS06820 (JMO07_001367) gpsB 1457606..1457950 (-) 345 WP_001286320.1 cell division regulator GpsB -
  JMO07_RS06825 (JMO07_001368) - 1457964..1458527 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  JMO07_RS06830 (JMO07_001369) - 1458520..1458870 (-) 351 WP_001000805.1 YppE family protein -
  JMO07_RS06835 (JMO07_001370) recU 1459409..1460035 (+) 627 WP_001108889.1 Holliday junction resolvase RecU Machinery gene
  JMO07_RS06840 (JMO07_001371) - 1460032..1462215 (+) 2184 WP_000138351.1 transglycosylase domain-containing protein -
  JMO07_RS06845 (JMO07_001372) - 1462781..1463122 (-) 342 WP_000182031.1 YpoC family protein -
  JMO07_RS06850 (JMO07_001373) nth 1463127..1463786 (-) 660 WP_000253765.1 endonuclease III -
  JMO07_RS06855 (JMO07_001374) - 1463776..1464462 (-) 687 WP_000362220.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24443.81 Da        Isoelectric Point: 9.7084

>NTDB_id=520974 JMO07_RS06835 WP_001108889.1 1459409..1460035(+) (recU) [Staphylococcus aureus strain HL16278]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=520974 JMO07_RS06835 WP_001108889.1 1459409..1460035(+) (recU) [Staphylococcus aureus strain HL16278]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7B2U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529