Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   JFL55_RS05645 Genome accession   NZ_CP066564
Coordinates   1245852..1248278 (-) Length   808 a.a.
NCBI ID   WP_041605115.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-69     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1240852..1253278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL55_RS05635 (JFL55_05635) rlmKL 1241850..1244006 (-) 2157 WP_012340636.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  JFL55_RS05640 (JFL55_05640) msbA 1244052..1245800 (-) 1749 WP_041605303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  JFL55_RS05645 (JFL55_05645) rec2 1245852..1248278 (-) 2427 WP_041605115.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JFL55_RS05650 (JFL55_05650) dksA 1248577..1249014 (+) 438 WP_012340641.1 RNA polymerase-binding protein DksA -
  JFL55_RS05655 (JFL55_05655) pcnB 1249316..1250689 (+) 1374 WP_012340642.1 polynucleotide adenylyltransferase PcnB -
  JFL55_RS05660 (JFL55_05660) folK 1250686..1251162 (+) 477 WP_012340643.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  JFL55_RS05665 (JFL55_05665) nagA 1251260..1252408 (-) 1149 WP_012340644.1 N-acetylglucosamine-6-phosphate deacetylase -
  JFL55_RS05670 (JFL55_05670) nagB 1252421..1253227 (-) 807 WP_012340645.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 92377.82 Da        Isoelectric Point: 9.5955

>NTDB_id=520951 JFL55_RS05645 WP_041605115.1 1245852..1248278(-) (rec2) [Histophilus somni strain ASc-MMNZ-VFA-69]
MKFNLDHYLFVILVSAMTLLITPRIFLLNWQWILILCLVLGLGYIGVKAVFFRCVLKLFFIFVLGLGFFHYQALNLLEQS
EHITRLPKKVQTNVKIAEIIQQKDYQAVIAEGKFTSSLPTQRIYLNWRTEQEVQVGEIWQVNMHIRPISSRLNIGGFDRQ
TWYLAKEITAYATVKSAVKIGEDFSWRATRLNQALQQTSNLVSQGLLLALGFGERAWLDKELWQLYQQTNTAHLIAISGL
HIGLAMFIGFTLGRAIQLLFPTRYIEPYFPLILGIFLAFCYAELAGFSIPTFRAIVALFIVCLCRICRVSYSVWQLFLRV
ICVLLILNPFMLLSASFWLSIGAVGCLIMWYQWIPLNLFLWKEKPLAQSSLKKVRYFIGLFHLQFGLLWFFTPIQLLIFN
GIALNGFWANLLLLPLFSFLLVPLILFAVLTEGALNSWNIADQLAIWINQLLKLLPNQWINISLAESYFISAILALLFTL
CCKWIIKCSTDDDLSLLRKVRKKSFYPIRLNFSDGFSHKKYQYGMVVSSAMFVIFLCLWFFSLYEQGRLKNTQWQFDTLD
VGQGLASLLVKNQHGILYDTGASWKNGSMAKIEIIPYLRRQGIILDKVILSHDDNDHAGGVKDIFQAYPNAEFISPSLKK
YENSPENRPHIACQKGKIWHWQGLYIEALSPSKIVMRANNPDSCVLIISDGQHKVLLTGDADVATEYKILSDLGKIDVLQ
VGHHGSKTSTGEKLLQHIQPKIALISSGRWNPWGFPHQDVVKRLNAVESAVYNTAISGQIRLTFKGKDIQIQTARTEFSP
WYRGLIGL

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=520951 JFL55_RS05645 WP_041605115.1 1245852..1248278(-) (rec2) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGAAATTCAACCTTGATCATTACCTTTTTGTTATTTTAGTGAGTGCAATGACATTGCTAATTACGCCTCGTATTTTTTT
ATTGAATTGGCAATGGATATTGATCTTATGTCTTGTTCTTGGGTTAGGATATATTGGTGTTAAAGCAGTATTTTTTCGCT
GTGTTCTAAAGCTATTTTTCATTTTTGTTCTTGGGTTGGGATTTTTTCATTATCAAGCATTAAACTTGTTGGAACAAAGT
GAGCATATTACCCGCTTACCTAAAAAAGTACAAACTAACGTTAAAATAGCTGAAATTATTCAGCAGAAAGACTATCAAGC
AGTGATCGCAGAAGGAAAATTCACCTCATCTTTGCCAACACAGCGAATTTATTTAAATTGGCGTACTGAGCAAGAGGTTC
AAGTTGGTGAAATTTGGCAAGTAAATATGCACATTCGTCCGATTTCTTCTCGATTAAATATAGGAGGATTTGATCGTCAA
ACCTGGTATTTAGCAAAAGAAATTACAGCTTATGCCACAGTAAAAAGTGCGGTGAAAATTGGTGAGGATTTTTCTTGGCG
AGCTACTCGACTGAATCAAGCTTTACAACAAACTTCCAATTTAGTTTCACAAGGTTTATTGCTTGCATTGGGTTTTGGTG
AAAGAGCATGGTTAGACAAGGAATTATGGCAACTTTATCAACAAACCAATACCGCACATTTAATTGCAATTTCAGGGTTG
CATATTGGTTTAGCTATGTTCATCGGTTTTACATTAGGGCGAGCTATTCAATTATTATTCCCTACTCGTTATATTGAACC
TTATTTTCCTTTAATATTAGGGATTTTTTTAGCATTCTGTTATGCAGAATTAGCGGGATTTTCAATTCCTACTTTTCGTG
CGATTGTCGCTTTATTTATAGTTTGTTTGTGTCGTATATGTCGAGTTTCCTATAGTGTTTGGCAACTATTTTTGCGGGTT
ATTTGTGTTTTACTGATACTTAATCCATTTATGTTATTGTCAGCCAGTTTTTGGCTATCAATCGGAGCGGTAGGTTGTTT
GATCATGTGGTATCAATGGATACCGCTAAATTTATTTTTATGGAAAGAAAAGCCTTTGGCACAATCTTCCTTGAAAAAAG
TGCGGTATTTTATCGGTCTTTTTCATTTGCAATTTGGGCTTTTGTGGTTTTTTACACCTATCCAACTCTTAATTTTTAAT
GGTATCGCCTTAAATGGATTTTGGGCTAATTTATTATTGTTGCCTTTGTTCAGTTTTTTGTTAGTTCCACTTATTCTTTT
TGCTGTACTGACGGAAGGTGCGTTAAATAGCTGGAATATAGCTGATCAGCTTGCTATATGGATCAATCAATTGTTAAAGC
TGTTACCAAATCAGTGGATCAATATTTCTCTTGCAGAAAGCTATTTTATTTCAGCTATATTAGCTTTGCTCTTCACCTTA
TGCTGTAAATGGATTATTAAGTGTTCAACCGACGATGATTTATCTTTATTGAGAAAAGTTAGAAAAAAAAGTTTTTACCC
TATACGGTTGAATTTTTCGGACGGTTTTTCACATAAAAAATATCAATATGGTATGGTGGTCAGTTCAGCTATGTTTGTTA
TTTTTTTATGTCTGTGGTTTTTTTCGCTATATGAACAAGGGCGATTAAAAAACACACAATGGCAATTTGATACTCTAGAT
GTTGGTCAAGGATTGGCAAGTTTATTGGTAAAAAATCAACATGGAATTTTGTATGATACGGGAGCAAGCTGGAAAAATGG
TAGTATGGCAAAAATTGAGATTATTCCTTATCTAAGAAGACAGGGTATTATTCTTGATAAAGTTATATTAAGTCATGATG
ATAATGATCATGCAGGTGGAGTAAAAGATATTTTCCAAGCTTATCCGAATGCTGAGTTTATTAGTCCCTCATTAAAAAAG
TACGAGAATTCTCCAGAAAATAGACCGCATATTGCTTGTCAAAAAGGAAAAATATGGCATTGGCAAGGGTTATATATTGA
AGCTTTATCGCCAAGTAAAATTGTGATGAGAGCCAATAATCCGGATTCTTGTGTGCTGATAATTTCAGATGGACAGCATA
AAGTACTATTAACAGGAGATGCTGATGTGGCGACTGAATATAAAATTTTGTCTGACTTGGGTAAGATTGATGTGTTACAG
GTCGGACATCATGGTAGTAAAACGTCAACCGGTGAGAAATTACTACAGCATATTCAGCCTAAAATTGCTTTAATTTCCAG
TGGACGTTGGAATCCGTGGGGATTTCCGCATCAAGATGTCGTCAAACGCTTAAATGCGGTTGAAAGTGCGGTCTATAATA
CGGCCATTTCCGGCCAAATCCGTTTAACATTTAAAGGAAAAGATATTCAAATTCAAACCGCAAGGACAGAGTTTAGCCCT
TGGTATAGAGGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-177)

Metallo-beta-lactamase superfamily (Lactamase_B)

(560-747)

Competence protein (Competence)

(210-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.485

100

0.515