Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JE032_RS30270 Genome accession   NZ_CP066546
Coordinates   6747455..6748822 (-) Length   455 a.a.
NCBI ID   WP_009050968.1    Uniprot ID   A0AB33WWE9
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6742455..6753822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JE032_RS30245 - 6743293..6743490 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  JE032_RS30250 - 6743506..6745572 (-) 2067 WP_009045728.1 carbon starvation CstA family protein -
  JE032_RS30255 - 6745783..6746244 (+) 462 WP_009050965.1 methyltransferase family protein -
  JE032_RS30260 - 6746303..6746671 (+) 369 WP_016703705.1 PilZ domain-containing protein -
  JE032_RS30265 - 6746697..6747425 (-) 729 WP_110175907.1 hypothetical protein -
  JE032_RS30270 radA 6747455..6748822 (-) 1368 WP_009050968.1 DNA repair protein RadA Machinery gene
  JE032_RS30275 - 6748868..6749416 (-) 549 WP_135006969.1 ankyrin repeat domain-containing protein -
  JE032_RS30280 katB 6749604..6751145 (-) 1542 WP_016703707.1 catalase KatB -
  JE032_RS30285 mscL 6751432..6751836 (+) 405 WP_016703708.1 large-conductance mechanosensitive channel protein MscL -
  JE032_RS30290 - 6751889..6752665 (-) 777 WP_016703709.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48840.31 Da        Isoelectric Point: 7.1317

>NTDB_id=520764 JE032_RS30270 WP_009050968.1 6747455..6748822(-) (radA) [Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=520764 JE032_RS30270 WP_009050968.1 6747455..6748822(-) (radA) [Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGTGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATTCCACGCTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGCGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGTTACAGACCTTGTGCAACATCGCCACCCGCATGCCGGCGCTCTACGTCACAGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTACGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCCCC
CGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGATCGCGGCTTGAAAGAGGTTTCCAACCCTTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGTCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGTCACGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACAGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAGCAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459