Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JE032_RS13075 Genome accession   NZ_CP066546
Coordinates   2865334..2867565 (+) Length   743 a.a.
NCBI ID   WP_063429108.1    Uniprot ID   A0AAD1E519
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2860334..2872565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JE032_RS13050 - 2861455..2862114 (+) 660 WP_038580923.1 transglutaminase-like domain-containing protein -
  JE032_RS13055 - 2862157..2862780 (+) 624 WP_038631107.1 glutathione S-transferase family protein -
  JE032_RS13060 - 2862913..2863845 (+) 933 WP_009047814.1 ABC transporter ATP-binding protein -
  JE032_RS13065 - 2863842..2864621 (+) 780 WP_063429107.1 ABC transporter permease -
  JE032_RS13070 - 2864670..2865185 (-) 516 WP_009047815.1 DUF2062 domain-containing protein -
  JE032_RS13075 comA 2865334..2867565 (+) 2232 WP_063429108.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JE032_RS13080 exbB 2867668..2868303 (+) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JE032_RS13085 - 2868300..2868728 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  JE032_RS13090 lpxK 2868728..2869738 (+) 1011 WP_063429110.1 tetraacyldisaccharide 4'-kinase -
  JE032_RS13095 - 2869762..2869947 (+) 186 WP_007931663.1 Trm112 family protein -
  JE032_RS13100 kdsB 2869944..2870708 (+) 765 WP_063429112.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JE032_RS13105 - 2870708..2871172 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  JE032_RS13110 murB 2871169..2872188 (+) 1020 WP_009047822.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81248.36 Da        Isoelectric Point: 9.7323

>NTDB_id=520753 JE032_RS13075 WP_063429108.1 2865334..2867565(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41]
MRTGMLALAAGLLSLCFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLAHYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWHWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=520753 JE032_RS13075 WP_063429108.1 2865334..2867565(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain SPS-41]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGTGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTTGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCTGCCGTAATGTATGCCCTG
GTGGCGGGACTGGCCCACTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCACCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTTTGGCAGCTGGATGTCGGGCAGGGGCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGTGATTCCGACCTGGGCGCCCGGGTGGTACTGC
CATCGTTGCGCAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGTCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCACTGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAATGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAG
CGCGCATTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACTGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.673

96.77

0.626