Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   SMUGS5_RS09250 Genome accession   NC_018089
Coordinates   1908208..1908921 (+) Length   237 a.a.
NCBI ID   WP_002266885.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1903208..1913921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS10700 - 1903989..1904327 (-) 339 Protein_1796 lipase -
  SMUGS5_RS09240 (SMUGS5_09185) treC 1904413..1906041 (-) 1629 WP_014835054.1 alpha,alpha-phosphotrehalase -
  SMUGS5_RS09245 (SMUGS5_09190) treP 1906067..1908034 (-) 1968 WP_014835055.1 PTS system trehalose-specific EIIBC component -
  SMUGS5_RS09250 (SMUGS5_09195) treR 1908208..1908921 (+) 714 WP_002266885.1 trehalose operon repressor Regulator
  SMUGS5_RS10600 - 1909048..1909185 (+) 138 WP_002279987.1 hypothetical protein -
  SMUGS5_RS09255 (SMUGS5_09200) dexA 1909267..1911819 (-) 2553 WP_080047990.1 dextranase DexA -
  SMUGS5_RS09260 (SMUGS5_09205) dtd 1912304..1912750 (-) 447 WP_002266260.1 D-aminoacyl-tRNA deacylase -

Sequence


Protein


Download         Length: 237 a.a.        Molecular weight: 27807.17 Da        Isoelectric Point: 9.7425

>NTDB_id=52068 SMUGS5_RS09250 WP_002266885.1 1908208..1908921(+) (treR) [Streptococcus mutans GS-5]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=52068 SMUGS5_RS09250 WP_002266885.1 1908208..1908921(+) (treR) [Streptococcus mutans GS-5]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAATTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACAAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACAGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.156

100

0.992


Multiple sequence alignment