Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JEQ22_RS12465 Genome accession   NZ_CP066501
Coordinates   2537240..2538007 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A02     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2532240..2543007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ22_RS12445 (JEQ22_12370) - 2532443..2533255 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  JEQ22_RS12450 (JEQ22_12375) ccpN 2533281..2533919 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  JEQ22_RS12455 (JEQ22_12380) glyS 2534019..2536058 (-) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  JEQ22_RS12460 (JEQ22_12385) glyQ 2536051..2536938 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  JEQ22_RS12465 (JEQ22_12390) recO 2537240..2538007 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  JEQ22_RS12470 (JEQ22_12395) - 2538044..2538187 (-) 144 WP_007408286.1 YqzL family protein -
  JEQ22_RS12475 (JEQ22_12400) era 2538343..2539248 (-) 906 WP_007408285.1 GTPase Era -
  JEQ22_RS12480 (JEQ22_12405) - 2539229..2539639 (-) 411 WP_003152976.1 cytidine deaminase -
  JEQ22_RS12485 (JEQ22_12410) - 2539763..2540137 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  JEQ22_RS12490 (JEQ22_12415) ybeY 2540118..2540591 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  JEQ22_RS12495 (JEQ22_12420) - 2540592..2542724 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=520538 JEQ22_RS12465 WP_003152982.1 2537240..2538007(-) (recO) [Bacillus velezensis strain ID-A02]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=520538 JEQ22_RS12465 WP_003152982.1 2537240..2538007(-) (recO) [Bacillus velezensis strain ID-A02]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CGAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894